Pairwise Alignments

Query, 445 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., MATE efflux family protein from Pseudomonas protegens RBAN4

 Score = 89.7 bits (221), Expect = 2e-22
 Identities = 101/441 (22%), Positives = 188/441 (42%), Gaps = 17/441 (3%)

Query: 4   RSIYRQFVRYTIPTVAAMLVNGLYQVVDGIFIGHYVGAEGLAGINVAWPVIGTILGIGML 63
           R +++ ++ + +P V +  +      ++GI+IG  +G + LA ++  +P++     I ++
Sbjct: 7   RPLWQVYLVFLLPMVLSNFLQSFSGTLNGIYIGQLLGTQALAAVSGMFPIV--FFFIALV 64

Query: 64  VGVGTGALASIKQ--GEGHPDSAKRILATGLMSLLLLAPIVAVILWFMADDFLRWQGAEG 121
           +G+G GA   I Q  G    D+ K +  + LM   L+  + AV+    A   L+  G   
Sbjct: 65  IGLGAGASVLIGQAWGARELDAVKSVAGSTLMLGALIGLLGAVLGMLFARPALQGLGTPA 124

Query: 122 RVFELGLQYLQVLIVGCLFTLGSIAMPFLLRNDHSPNLATLLMVIGALTNIALDYLFI-A 180
            V +  + Y +V+++     L  +    LLR         L +++  L  + L    I  
Sbjct: 125 DVLDDAVGYARVMMLIMPLLLVFVLYTQLLRGVSDTLSPLLALMVSTLAGLLLTPALIRG 184

Query: 181 WLQWELTG--AAIATTLAQVVVTLLGLAYFFSAR----ANMRLTRRCLRLEWHSLPKIFA 234
           WL     G  +A    LA  ++ +  L +  S R    A  R     LRL    L K+  
Sbjct: 185 WLGLPPMGIQSAAFAGLAGNILAMGFLVWRLSGRDHPLAPDRALFAALRLNRAILGKVLR 244

Query: 235 IGVSSFFMYAYGSTMVALHNTLMIEYGNAVMVGAYAVMGYIVTIYYLTVEGIANGMQPLA 294
           IG+ +       S    +   L+  +G+     AY  +  IV         IA     L 
Sbjct: 245 IGLPTGVQMVVISLSELVILALVNRHGSQA-TAAYGAVTQIVNYVQFPALSIAITASILG 303

Query: 295 SYHFGARNYDHIRKLLRLAMGIAVLGGMAFVLVLNLFPEQAIAIFNSSDSELIAGAQMGI 354
           +   GA   + I  +LR  + I +    A VL+  L     + +F    + L+  AQ  +
Sbjct: 304 AQAIGAGRLERITPILRTGLAINLCLTGALVLLGYLISHWLLGLFIIDPAALVQ-AQHLL 362

Query: 355 KLHLFAMYLDGFLVVSAAYYQSTNRGGKAMFITV-GNMSIMLPFLFILPQFFGLTGVWIA 413
            + L+++ + GF  V     +++      + I++   + + +P  ++L   FGL GVW+A
Sbjct: 363 HIMLWSILVFGFQAVVGGIMRASGTVLVPVAISIFCILGVQVPAAYVLDAHFGLQGVWMA 422

Query: 414 LPI---SNIVLSTVVGIMLWR 431
            P+   + +VL      ++WR
Sbjct: 423 FPVAYLTMLVLQVCYFKLVWR 443



 Score = 33.9 bits (76), Expect = 1e-05
 Identities = 38/207 (18%), Positives = 85/207 (41%), Gaps = 2/207 (0%)

Query: 2   MNRSIYRQFVRYTIPTVAAMLVNGLYQVVDGIFIGHYVGAEGLAGINVAWPVIGTILGIG 61
           +NR+I  + +R  +PT   M+V  L ++V    +  + G++  A       ++  +    
Sbjct: 234 LNRAILGKVLRIGLPTGVQMVVISLSELVILALVNRH-GSQATAAYGAVTQIVNYVQFPA 292

Query: 62  MLVGVGTGALASIKQGEGHPDSAKRILATGLMSLLLLAPIVAVILWFMADDFLRWQGAEG 121
           + + +    L +   G G  +    IL TGL   L L   + V+L ++   +L       
Sbjct: 293 LSIAITASILGAQAIGAGRLERITPILRTGLAINLCLTGAL-VLLGYLISHWLLGLFIID 351

Query: 122 RVFELGLQYLQVLIVGCLFTLGSIAMPFLLRNDHSPNLATLLMVIGALTNIALDYLFIAW 181
               +  Q+L  +++  +   G  A+   +       L  + + I  +  + +   ++  
Sbjct: 352 PAALVQAQHLLHIMLWSILVFGFQAVVGGIMRASGTVLVPVAISIFCILGVQVPAAYVLD 411

Query: 182 LQWELTGAAIATTLAQVVVTLLGLAYF 208
             + L G  +A  +A + + +L + YF
Sbjct: 412 AHFGLQGVWMAFPVAYLTMLVLQVCYF 438