Pairwise Alignments

Query, 445 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., Na+ driven multidrug efflux pump from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  102 bits (253), Expect = 3e-26
 Identities = 113/442 (25%), Positives = 196/442 (44%), Gaps = 23/442 (5%)

Query: 6   IYRQFVRYTIPTVAAMLVNGLYQVVDGIFIGHYVGAEGLAGINVAWPVIGTILGIGMLVG 65
           ++R ++ + +P V + ++ GL   ++GIFIG  +G   LA ++  +P++     I +++G
Sbjct: 9   LWRVYLVFLVPMVLSNILQGLSGTLNGIFIGQMLGTHALAAVSGMFPIV--FFFISLVIG 66

Query: 66  VGTGALASIKQ--GEGHPDSAKRILATGLMSLLLLAPIVAVILWFMADDFLRWQGAEGRV 123
           +G GA   I Q  G   P   K I  T L+   L+  + AV+    A   L+  G    V
Sbjct: 67  IGAGASVLIGQAWGAREPHKVKAIAGTALVLGALIGLVAAVLGVVFARPALQALGTPVDV 126

Query: 124 FELGLQYLQVLIVGCLFTLGSIAMPFLLR---NDHSPNLATLLMVIGALTNIALDYLFIA 180
            +  + Y +V+++     L  I    LLR   +  SP +A LL    AL  +    L   
Sbjct: 127 LDDAVAYARVMLLIMPLLLVFILFTQLLRGVSDTVSPLIALLLST--ALGLLLTPALIQG 184

Query: 181 WLQWELTG--AAIATTLAQVVVTLLGLAYFFSARANMRLTRR----CLRLEWHSLPKIFA 234
           WL     G  +A    L      L  LA+    + ++    R     LRL+   L K+  
Sbjct: 185 WLGLPRLGIQSAAYAGLVSYAAALGFLAWRLGRKHHVLAVDRELIGALRLDRDILAKVMR 244

Query: 235 IGVSSFFMYAYGSTMVALHNTLMIEYGNAVMVGAYAVMGYIVTIYYLTVEGIANGMQPLA 294
           IG+ +       S    +   L+  +G+     AY  +  +V         IA     LA
Sbjct: 245 IGIPTGLQMVVISVSELVILALVNGHGSQA-TAAYGAVTQVVNYVQFPALSIAITASILA 303

Query: 295 SYHFGARNYDHIRKLLRLAMGI-AVLGGMAFVLVLNLFPEQAIAIFNSSDSELIAGAQMG 353
           +   GA   D +  +LR  + + AVL G A VL+      + + +F  +  E+ A A+  
Sbjct: 304 AQSIGAGRVDRLGAILRTGLWLNAVLTG-ALVLLGYALSHKLMGLF-LTQPEVRAQAEHL 361

Query: 354 IKLHLFAMYLDGFLVVSAAYYQSTNRGGKAMFITV-GNMSIMLPFLFILPQFFGLTGVWI 412
           + + L+++ + GF  V     +++      M I+V   ++I LP  ++L    GL GVW+
Sbjct: 362 LHIMLWSILVFGFQAVVGGLMRASGVVMVPMAISVFCILAIQLPAAYVLDAKMGLPGVWV 421

Query: 413 ALPISNI---VLSTVVGIMLWR 431
           A P++ +   V+ T    ++WR
Sbjct: 422 AFPVAYVAMLVMQTAYYRLVWR 443