Pairwise Alignments

Query, 709 a.a., polyribonucleotide nucleotidyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

 Score = 63.2 bits (152), Expect = 3e-14
 Identities = 69/268 (25%), Positives = 117/268 (43%), Gaps = 27/268 (10%)

Query: 455 GVPIKASVAGIAMGLVKEENDFVVLSDILGDEDHLGDMDFK-VAGTATGVTALQMDIKIE 513
           G  +K +V  I       EN +V++   L  E  +    FK  AG        Q+D+ ++
Sbjct: 21  GTIVKGTVVAI-------ENGYVLVDAGLKSESAIPAEQFKNAAGELEVQVGSQVDVALD 73

Query: 514 GITKEIMQIALNQAKGARLHILSVMDQAISAARSDISEFAPRIHT-MKISVEKIKDVIGK 572
            +     +  L++ K  R     V+++A   A + I     ++     + +  I+  +  
Sbjct: 74  AVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTVELNGIRAFLPG 133

Query: 573 GGAVIRQLTEETGTTIEIED-DGTIKIAATDGDQAKEAIRRIQEITAEVEV--------- 622
               +R + +    T  +E+ +   K+   D  +    + R   I +E  V         
Sbjct: 134 SLVDVRPIRD----TAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSVERDELLETL 189

Query: 623 --GVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYLTEGQEVQVKVLEI 680
             G    G V  L D+GAFV  L G DGL+HI+ +A KRV+  S+ +  G E+ VKVL+ 
Sbjct: 190 QEGTEVKGIVKNLTDYGAFVD-LGGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKF 248

Query: 681 DR-QGRVRLSMKEAVETSDAAAAEVAPQ 707
           DR + RV L +K+  E    A A+  P+
Sbjct: 249 DRDRTRVSLGLKQLGEDPWVAIAKRYPE 276



 Score = 49.3 bits (116), Expect = 5e-10
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 11/115 (9%)

Query: 588 IEIEDDGTIKIAATDGDQAKEAIRRIQ-------EITAEVEVGVIYTGKVARLADFGAFV 640
           + + D+  +K+   D D+ + ++   Q        I      G   +G+V  L D+G FV
Sbjct: 235 VNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFV 294

Query: 641 TILPGKDGLVHISQI--ADKRVEKVSDYLTEGQEVQVKVLEIDRQ-GRVRLSMKE 692
            I  G +GLVH+S++   +K +   S  +  G EV+V VL+ID +  R+ L +K+
Sbjct: 295 EIEEGVEGLVHVSEMDWTNKNIHP-SKVVNVGDEVEVMVLDIDEERRRISLGLKQ 348



 Score = 42.4 bits (98), Expect = 6e-08
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 627 TGKVARLADFGAFVTILPGKDGLVHISQIA-DKRVEKVSDYLTEGQEVQVKVLEID-RQG 684
           TGK+  + DFG F+ +  G DGLVH+S I+ +   E+      +G E+   VL +D  + 
Sbjct: 368 TGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERE 427

Query: 685 RVRLSMKE 692
           R+ L +K+
Sbjct: 428 RISLGIKQ 435



 Score = 40.0 bits (92), Expect = 3e-07
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 623 GVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYLTEGQEVQVKVLEIDR 682
           G +  G V  +   GA + +  G +G +  S+++  R+E  S  L  G +V+ K   +DR
Sbjct: 451 GALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDR 510

Query: 683 QGRV-RLSMKEAVETSD 698
           + RV  LS+K   E  +
Sbjct: 511 KNRVINLSIKAKDEAEE 527