Pairwise Alignments

Query, 709 a.a., polyribonucleotide nucleotidyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., 30S ribosomal protein S1 (NCBI) from Escherichia coli BW25113

 Score = 59.3 bits (142), Expect = 5e-13
 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 2/94 (2%)

Query: 615 EITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYLTEGQEVQ 674
           ++   ++ G+   G V  L D+GAFV  L G DGL+HI+ +A KRV+  S+ +  G E+ 
Sbjct: 184 QLLENLQEGMEVKGIVKNLTDYGAFVD-LGGVDGLLHITDMAWKRVKHPSEIVNVGDEIT 242

Query: 675 VKVLEIDRQ-GRVRLSMKEAVETSDAAAAEVAPQ 707
           VKVL+ DR+  RV L +K+  E    A A+  P+
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPE 276



 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 52/217 (23%), Positives = 96/217 (44%), Gaps = 23/217 (10%)

Query: 498 GTATGVTALQMDIKIEGITKEIMQIALNQAKG-ARLHILSVMDQAISAARSDISEFAPRI 556
           G+   V  ++  + +EG   E   I L+Q +    +   +V++   SA R  + E     
Sbjct: 133 GSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEG 192

Query: 557 HTMKISVEKIKDV---IGKGGA--------VIRQLTEETGTTIEIEDDGTIKIAATDGDQ 605
             +K  V+ + D    +  GG         +  +  +     + + D+ T+K+   D ++
Sbjct: 193 MEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRER 252

Query: 606 AKEAIRRIQ-------EITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQI--A 656
            + ++   Q        I      G   TG+V  L D+G FV I  G +GLVH+S++   
Sbjct: 253 TRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWT 312

Query: 657 DKRVEKVSDYLTEGQEVQVKVLEIDRQ-GRVRLSMKE 692
           +K +   S  +  G  V+V VL+ID +  R+ L +K+
Sbjct: 313 NKNIHP-SKVVNVGDVVEVMVLDIDEERRRISLGLKQ 348



 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 623 GVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYLTEGQEVQVKVLEIDR 682
           G I TGKV  +   GA V +  G +G +  S+ +  RVE  +  L+ G EV+ K   +DR
Sbjct: 451 GAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDR 510

Query: 683 QGR-VRLSM--KEAVETSDAAA 701
           + R + LS+  K+  +  DA A
Sbjct: 511 KNRAISLSVRAKDEADEKDAIA 532



 Score = 43.1 bits (100), Expect = 4e-08
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 628 GKVARLADFGAFVTILPGKDGLVHISQIADKRV--EKVSDYLTEGQEVQVKVLEID-RQG 684
           GK+  + DFG F+ +  G DGLVH+S I+      E V +Y  +G E+   VL++D  + 
Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREY-KKGDEIAAVVLQVDAERE 427

Query: 685 RVRLSMKEAVE 695
           R+ L +K+  E
Sbjct: 428 RISLGVKQLAE 438



 Score = 25.8 bits (55), Expect = 0.006
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 11/85 (12%)

Query: 618 AEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYL-TEGQEVQVK 676
           AE   GVI  GKV      G F   L G    +  S +    V  V D L  EG+E++ K
Sbjct: 105 AETVTGVI-NGKVK-----GGFTVELNGIRAFLPGSLVD---VRPVRDTLHLEGKELEFK 155

Query: 677 VLEID-RQGRVRLSMKEAVETSDAA 700
           V+++D ++  V +S +  +E+ ++A
Sbjct: 156 VIKLDQKRNNVVVSRRAVIESENSA 180