Pairwise Alignments

Query, 709 a.a., polyribonucleotide nucleotidyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., 30S ribosomal protein S1 from Dickeya dianthicola ME23

 Score = 59.3 bits (142), Expect = 5e-13
 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 2/94 (2%)

Query: 615 EITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYLTEGQEVQ 674
           ++   ++ G+   G V  L D+GAFV  L G DGL+HI+ +A KRV+  S+ +  G E+ 
Sbjct: 184 QLLENLQEGMEVKGIVKNLTDYGAFVD-LGGVDGLLHITDMAWKRVKHPSEIVNVGDEIT 242

Query: 675 VKVLEIDRQ-GRVRLSMKEAVETSDAAAAEVAPQ 707
           VKVL+ DR+  RV L +K+  E    A A+  P+
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPE 276



 Score = 51.2 bits (121), Expect = 1e-10
 Identities = 61/255 (23%), Positives = 109/255 (42%), Gaps = 34/255 (13%)

Query: 460 ASVAGIAMGLVKEENDFVVLSDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEI 519
           A+V G+  G VK    F V          L  +   + G+   V  ++  + +EG   E 
Sbjct: 106 ATVTGVINGKVK--GGFTV---------ELNGIRAFLPGSLVDVRPVRDTLHLEGKELEF 154

Query: 520 MQIALNQAKG-ARLHILSVMDQAISAARSDISEFAPRIHTMKISVEKIKDV---IGKGGA 575
             I L+Q +    +   +V++   SA R  + E       +K  V+ + D    +  GG 
Sbjct: 155 KVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGV 214

Query: 576 --------VIRQLTEETGTTIEIEDDGTIKIAATDGDQAKEAIRRIQ-------EITAEV 620
                   +  +  +     + + D+ T+K+   D ++ + ++   Q        I    
Sbjct: 215 DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRY 274

Query: 621 EVGVIYTGKVARLADFGAFVTILPGKDGLVHISQI--ADKRVEKVSDYLTEGQEVQVKVL 678
             G   TG+V  L D+G FV I  G +GLVH+S++   +K +   S  +  G  V+V VL
Sbjct: 275 PEGTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHP-SKVVNVGDVVEVMVL 333

Query: 679 EIDRQ-GRVRLSMKE 692
           +ID +  R+ L +K+
Sbjct: 334 DIDEERRRISLGLKQ 348



 Score = 45.4 bits (106), Expect = 7e-09
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 623 GVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYLTEGQEVQVKVLEIDR 682
           G I TGKV  +   GA V +  G +G +  S+ +  R+E  +  L+ G EV+ K   +DR
Sbjct: 451 GAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRIEDATLVLSVGDEVEAKYTGVDR 510

Query: 683 QGRV---RLSMKEAVETSDAAAAEVAPQAE 709
           + RV    +  K+  +  DA A+    Q E
Sbjct: 511 KNRVVSLSVRAKDEADEKDAIASVNNKQEE 540



 Score = 43.1 bits (100), Expect = 4e-08
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 628 GKVARLADFGAFVTILPGKDGLVHISQIADKRV--EKVSDYLTEGQEVQVKVLEID-RQG 684
           GK+  + DFG F+ +  G DGLVH+S I+      E V +Y  +G E+   VL++D  + 
Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREY-KKGDEIAAVVLQVDAERE 427

Query: 685 RVRLSMKEAVE 695
           R+ L +K+  E
Sbjct: 428 RISLGVKQLAE 438



 Score = 25.8 bits (55), Expect = 0.006
 Identities = 35/144 (24%), Positives = 69/144 (47%), Gaps = 15/144 (10%)

Query: 561 ISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIK-IAATDGDQAKEAIRRIQEITAE 619
           I VE+ K+  G+   +  Q+ +E    ++  +DG  + + + +  +  EA   +++   E
Sbjct: 48  IPVEQFKNAQGE---IEIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWLMLEKAYEE 104

Query: 620 -VEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYL-TEGQEVQVKV 677
              V  +  GKV      G F   L G    +  S +    V  V D L  EG+E++ KV
Sbjct: 105 SATVTGVINGKVK-----GGFTVELNGIRAFLPGSLVD---VRPVRDTLHLEGKELEFKV 156

Query: 678 LEID-RQGRVRLSMKEAVETSDAA 700
           +++D ++  V +S +  +E+ ++A
Sbjct: 157 IKLDQKRNNVVVSRRAVIESENSA 180