Pairwise Alignments

Query, 709 a.a., polyribonucleotide nucleotidyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 556 a.a., 30S ribosomal protein S1 from Alteromonas macleodii MIT1002

 Score = 58.2 bits (139), Expect = 1e-12
 Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 2/80 (2%)

Query: 614 QEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYLTEGQEV 673
           + + A +E G    G V  L D+GAFV  L G DGL+HI+ +A KRV+  S+ +  G E+
Sbjct: 183 ETLLANLEEGHEIKGIVKNLTDYGAFVD-LGGVDGLLHITDMAWKRVKHPSEIVNVGDEI 241

Query: 674 QVKVLEIDRQ-GRVRLSMKE 692
            VKVL+ D++  RV L MK+
Sbjct: 242 NVKVLKFDKEKQRVSLGMKQ 261



 Score = 50.4 bits (119), Expect = 2e-10
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 614 QEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQI--ADKRVEKVSDYLTEGQ 671
           QEI +    G    G+V  L D+G FV I  G +GLVH+S++   +K +   S  +  G 
Sbjct: 268 QEIASRYPEGTKINGQVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHP-SKVVNLGD 326

Query: 672 EVQVKVLEIDRQ-GRVRLSMKEAV 694
            V V VLEID +  R+ L +K+ +
Sbjct: 327 TVDVMVLEIDEERRRISLGLKQCI 350



 Score = 46.2 bits (108), Expect = 4e-09
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 5/93 (5%)

Query: 607 KEAIRRIQEITAEV-EVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR--VEKV 663
           K+ I    E  AE  E G   +GK+  + DFG F+ +  G DGLVH+S I+  +   + V
Sbjct: 347 KQCIANPWETFAESHEKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNKSGEDAV 406

Query: 664 SDYLTEGQEVQVKVLEID-RQGRVRLSMKEAVE 695
            DY  +G E+   VL++D  + R+ L +K+  E
Sbjct: 407 RDY-KKGDEISAVVLQVDPERERISLGVKQIEE 438



 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 623 GVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYLTEGQEVQVKVLEIDR 682
           G I TG V  +   G  V +    DG + ++ +A +RVE  ++  + G  ++ K + +DR
Sbjct: 451 GAIVTGTVTAVDAKGVTVNLAEEVDGYIRVADLAVERVEDATEVASVGDSIEAKFMGVDR 510

Query: 683 QGR-VRLSMKEAVETSDAAAAEVAPQAE 709
           + R V LS+K   +  +  A +   Q E
Sbjct: 511 KNRTVNLSVKAKDQADEKEAIDKVNQQE 538