Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 321 a.a., tRNA pseudouridine(55) synthase (EC 5.4.99.25) from Variovorax sp. SCN45

 Score =  227 bits (579), Expect = 2e-64
 Identities = 138/308 (44%), Positives = 181/308 (58%), Gaps = 15/308 (4%)

Query: 4   RRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATK 63
           R + R +HGV+LLDKP G+SSN ALQK K L  AEKAGHTG LDPLATG+LP+C G ATK
Sbjct: 7   RVQRRPVHGVLLLDKPLGLSSNQALQKAKWLLRAEKAGHTGTLDPLATGVLPLCFGAATK 66

Query: 64  FSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQVPS 123
           FSQ  LD+DK Y   A+LG +T T D++G V+  R V V  + L    A+F G   QVP 
Sbjct: 67  FSQLHLDADKTYEATARLGVKTATGDAEGDVIAERSVQVTPEDLARVEAQFTGPIRQVPP 126

Query: 124 MFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFE--GDEV-EMEVHCSKGTYIR 180
           M SALK  G+ LYEYAR+GIE+ R  R + ++++ +      GD V  +    SKGTYIR
Sbjct: 127 MHSALKKDGKALYEYAREGIEIERAPRDVVIHKLAIDTVGAIGDNVIRILATVSKGTYIR 186

Query: 181 TIVDDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPLL 240
           T+ +D+GE LGCGAH+T LRRV   ++   + VTLE L A+ E    DE+         L
Sbjct: 187 TLGEDIGEALGCGAHLTSLRRVATGDFVEAQCVTLEALEAMDE----DERLAR------L 236

Query: 241 LPMDTAVEALPEVNVIPELMTLIQHGQAVQVSGAPSDGMVRITGGEQKLFLGVGEIDDNG 300
           LP +  V+    V +  E       G   + S   + G V + G E   FLG   +   G
Sbjct: 237 LPAEALVDGHSRVTLGAEDAARFLSGLRRRGSWVDA-GEVAVFGAEPAAFLGTAHV-TAG 294

Query: 301 KVAPKRLV 308
           ++ P RL+
Sbjct: 295 ELIPGRLL 302