Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., tRNA pseudouridine synthase B (EC 4.2.1.70) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  228 bits (581), Expect = 2e-64
 Identities = 119/251 (47%), Positives = 162/251 (64%), Gaps = 8/251 (3%)

Query: 4   RRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATK 63
           R + R +HGV+LLDKP G+SSN ALQK K L  AEKAGHTG LDPLA+G+LP+C G ATK
Sbjct: 7   RVQRRPVHGVLLLDKPLGLSSNQALQKAKWLLRAEKAGHTGTLDPLASGVLPLCFGAATK 66

Query: 64  FSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQVPS 123
           FSQ  LD+DK Y  + +LG +T T D++G+V+ TR V+     ++  + +F G   QVP 
Sbjct: 67  FSQIHLDADKTYETVVRLGVKTSTGDAEGEVIDTRAVNCSVGQVVEVLDRFTGPIAQVPP 126

Query: 124 MFSALKYQGRPLYEYARQGIEVPREARKITVYEIEL--HRFEGD--EVEMEVHCSKGTYI 179
           M SALK  G+ LYEYAR G  V REAR + ++++EL   + +GD  ++ + V CSKGTYI
Sbjct: 127 MHSALKKDGKALYEYARDGETVEREARHVVIHDLELLDMQLQGDAPQLRLRVRCSKGTYI 186

Query: 180 RTIVDDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVL--- 236
           RT+ +D+GE LGCG H+ +LRR+    +   + V+L  L AL E+  +        L   
Sbjct: 187 RTLGEDIGEALGCGGHLILLRRIATGPFDLSQCVSLAALEALNEEDRQARLLPVQCLLEG 246

Query: 237 -DPLLLPMDTA 246
            DP+ L  D A
Sbjct: 247 HDPVTLDADNA 257