Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., tRNA pseudouridine synthase B (EC 4.2.1.70) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  413 bits (1062), Expect = e-120
 Identities = 203/306 (66%), Positives = 244/306 (79%)

Query: 4   RRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATK 63
           RR+GR IHGV+LLDKP G+SSND LQKVKR+Y A +AGHTGALDPLATGMLPICLGEATK
Sbjct: 5   RRRGRDIHGVLLLDKPQGMSSNDVLQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64

Query: 64  FSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQVPS 123
           FSQ+LLDSDKRYRVIA+LG+RTDTSD+DGQ+VQ RPV    + L + +  FRG+ +Q+PS
Sbjct: 65  FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVTFSAEQLASALETFRGDIEQIPS 124

Query: 124 MFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFEGDEVEMEVHCSKGTYIRTIV 183
           M+SALKYQG+ LYEYARQGIEVPREAR ITVYE+   R EG+E+E+EVHCSKGTYIRTI+
Sbjct: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEVHCSKGTYIRTII 184

Query: 184 DDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPLLLPM 243
           DDLGE LGCGAHVT LRR+ V+ YP +RMVTLE L  LV QA +     A +LDPLL+PM
Sbjct: 185 DDLGEKLGCGAHVTYLRRLTVSKYPVDRMVTLEHLQTLVAQAEQQGVPAAQLLDPLLMPM 244

Query: 244 DTAVEALPEVNVIPELMTLIQHGQAVQVSGAPSDGMVRITGGEQKLFLGVGEIDDNGKVA 303
           D+     P VN+        ++G  V+ +GAP  G+VR+T GE   F+G+GEIDD G+VA
Sbjct: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTTGAPLKGLVRVTEGEDDKFIGMGEIDDEGRVA 304

Query: 304 PKRLVV 309
           P+RLVV
Sbjct: 305 PRRLVV 310