Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 316 a.a., tRNA pseudouridine(55) synthase from Enterobacter asburiae PDN3

 Score =  413 bits (1062), Expect = e-120
 Identities = 205/306 (66%), Positives = 245/306 (80%)

Query: 4   RRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATK 63
           RR+GR +HGV+LLDKP G SSND LQKVKR+Y A +AGHTGALDPLATGMLP+CLGEATK
Sbjct: 5   RRRGRDVHGVLLLDKPQGASSNDVLQKVKRIYNANRAGHTGALDPLATGMLPVCLGEATK 64

Query: 64  FSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQVPS 123
           FSQ+LLDSDKRYRVIAKLG+RTDTSD+DGQVV+ RPV    + L A +  FRG+T QVPS
Sbjct: 65  FSQYLLDSDKRYRVIAKLGQRTDTSDADGQVVEERPVTFSAEQLDAALESFRGDTMQVPS 124

Query: 124 MFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFEGDEVEMEVHCSKGTYIRTIV 183
           M+SALKYQG+ LYEYARQGI+VPREAR ITVYE+   R EGDE+E+EVHCSKGTYIRTI+
Sbjct: 125 MYSALKYQGKKLYEYARQGIDVPREARPITVYELLFIRHEGDELELEVHCSKGTYIRTII 184

Query: 184 DDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPLLLPM 243
           DDLGE LGCGAHV  LRR+ V+ YP ERMVTLEQL  LVEQA     A AD+LDPLL+PM
Sbjct: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEQLRELVEQAEAQGIAPADLLDPLLMPM 244

Query: 244 DTAVEALPEVNVIPELMTLIQHGQAVQVSGAPSDGMVRITGGEQKLFLGVGEIDDNGKVA 303
           D+     P VN+        ++G  V+ + AP +G+VR+T G++  F+G+GE+D  G+VA
Sbjct: 245 DSPAADFPVVNLPLTSSVYFKNGNPVRTAQAPLEGLVRVTEGDEGKFIGMGEMDGEGRVA 304

Query: 304 PKRLVV 309
           P+RLVV
Sbjct: 305 PRRLVV 310