Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., tRNA pseudouridine(55) synthase TruB from Dickeya dadantii 3937

 Score =  442 bits (1138), Expect = e-129
 Identities = 215/306 (70%), Positives = 257/306 (83%)

Query: 4   RRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATK 63
           RR+GR IHGV+LLDKP G SSND LQKVKRL+ A KAGHTGALDPLATGMLP+CLGEATK
Sbjct: 5   RRRGRDIHGVLLLDKPQGASSNDVLQKVKRLFNANKAGHTGALDPLATGMLPVCLGEATK 64

Query: 64  FSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQVPS 123
           FSQ+LLD+DKRYRVIA+LG+RTDTSD+DG V+Q RPV   +D L+  +  FRGET QVPS
Sbjct: 65  FSQYLLDADKRYRVIARLGQRTDTSDADGNVIQERPVAFPHDLLMQALDSFRGETQQVPS 124

Query: 124 MFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFEGDEVEMEVHCSKGTYIRTIV 183
           M+SALKYQGRPLYEYARQG+ VPREAR ITVYE++  R+EGDE+E+E+HCSKGTYIRTI+
Sbjct: 125 MYSALKYQGRPLYEYARQGLVVPREARDITVYELQFIRWEGDELELEIHCSKGTYIRTII 184

Query: 184 DDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPLLLPM 243
           DDLGE LGCGAHV  LRR+ VA YP ERMVTLEQL AL EQA   E+ + ++LD LLLPM
Sbjct: 185 DDLGEKLGCGAHVIYLRRLQVATYPIERMVTLEQLQALREQAEAQEQPIGELLDVLLLPM 244

Query: 244 DTAVEALPEVNVIPELMTLIQHGQAVQVSGAPSDGMVRITGGEQKLFLGVGEIDDNGKVA 303
           DTAV+A PEVN+ P +   ++ GQAV+ +  P++GMVRIT G++  F+G+GEIDD G+VA
Sbjct: 245 DTAVQAFPEVNLSPVVAGYLKLGQAVRAAATPAEGMVRITEGDEHRFIGMGEIDDEGRVA 304

Query: 304 PKRLVV 309
           P+RLVV
Sbjct: 305 PRRLVV 310