Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase from Escherichia coli BL21

 Score =  417 bits (1071), Expect = e-121
 Identities = 204/306 (66%), Positives = 248/306 (81%)

Query: 4   RRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATK 63
           RR+GR I+GV+LLDKP G+SSNDALQKVKR+Y A +AGHTGALDPLATGMLPICLGEATK
Sbjct: 5   RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64

Query: 64  FSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQVPS 123
           FSQ+LLDSDKRYRVIA+LG+RTDTSD+DGQ+V+ RPV    + L A +  FRG+ +Q+PS
Sbjct: 65  FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124

Query: 124 MFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFEGDEVEMEVHCSKGTYIRTIV 183
           M+SALKYQG+ LYEYARQGIEVPREAR ITVYE+   R EG+E+E+E+HCSKGTYIRTI+
Sbjct: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184

Query: 184 DDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPLLLPM 243
           DDLGE LGCGAHV  LRR+ V+ YP ERMVTLE L  LVEQA + +   A++LDPLL+PM
Sbjct: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244

Query: 244 DTAVEALPEVNVIPELMTLIQHGQAVQVSGAPSDGMVRITGGEQKLFLGVGEIDDNGKVA 303
           D+     P VN+        ++G  V+ SGAP +G+VR+T GE   F+G+GEIDD G+VA
Sbjct: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304

Query: 304 PKRLVV 309
           P+RLVV
Sbjct: 305 PRRLVV 310