Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., tRNA pseudouridine synthase B from Azospirillum sp. SherDot2

 Score =  207 bits (528), Expect = 2e-58
 Identities = 113/270 (41%), Positives = 159/270 (58%), Gaps = 10/270 (3%)

Query: 1   MARRRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGE 60
           MAR+RKG  IHG ++LDKP G++S  AL KV+RL  AEKAGH G LDPLATG+LPI LGE
Sbjct: 1   MARKRKGTPIHGWVVLDKPEGMTSTQALSKVRRLLNAEKAGHGGTLDPLATGILPIALGE 60

Query: 61  ATKFSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQ 120
           ATK   + +D  K YR   + GERT T D +G+V+         D + A +  F GE  Q
Sbjct: 61  ATKTVSYAMDGAKTYRFSIRWGERTSTDDREGEVIARSDHRPSTDEIRAALPAFLGEIQQ 120

Query: 121 VPSMFSALKYQGRPLYEYARQGIEVPREARKITVYEIEL-HRFEGDEVEMEVHCSKGTYI 179
           VP  F A+K  G   Y+ AR+G  V   AR + +   EL    + D    EV C KGTY+
Sbjct: 121 VPPQFCAIKIDGERAYDIAREGDAVDLAARTVRIDRFELVEEPDADHAVFEVDCGKGTYV 180

Query: 180 RTIVDDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPL 239
           R++  DL E LG   HV +LRR+ V ++  +R ++L++L A+ + A          ++ L
Sbjct: 181 RSLARDLSEALGTVGHVGLLRRLRVGSFTLDRAISLDELAAMEQGA---------AVERL 231

Query: 240 LLPMDTAVEALPEVNVIPELMTLIQHGQAV 269
           LLP++TA++ +P + +       ++HGQ V
Sbjct: 232 LLPIETALDDIPALALTEAEAHRLRHGQTV 261