Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., tRNA pseudouridine synthase B from Alteromonas macleodii MIT1002

 Score =  311 bits (798), Expect = 1e-89
 Identities = 177/325 (54%), Positives = 224/325 (68%), Gaps = 18/325 (5%)

Query: 1   MARRRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGE 60
           MARRRKGR I+G++LLDKP G SSN  LQKV+ LY A KAGHTGALDPLA+GMLP+CLGE
Sbjct: 1   MARRRKGREINGIVLLDKPLGGSSNQLLQKVRWLYKAAKAGHTGALDPLASGMLPLCLGE 60

Query: 61  ATKFSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQ 120
           ATKFSQFLLD++K Y V A+LG RT TSD+DG+VV+ +PV V  + +      F G++ Q
Sbjct: 61  ATKFSQFLLDAEKTYEVTAQLGVRTTTSDADGEVVEEKPVDVSEEQVRDACLAFLGKSKQ 120

Query: 121 VPSMFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFEGDEVEMEVHCSKGTYIR 180
           +PSMFSALK+QG+PLY YARQGIE+ RE R I VYE+++ R E   VEM + CSKGTYIR
Sbjct: 121 IPSMFSALKHQGKPLYHYARQGIEIEREPRDIEVYELDVLRIELPFVEMRIKCSKGTYIR 180

Query: 181 TIVDDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPLL 240
           +IVDDLG+ LGCGA+VT L R  VA+YP ++MV+L++L  + E     E      LD LL
Sbjct: 181 SIVDDLGQNLGCGAYVTRLHRTEVADYPTDKMVSLDKLIEIQESL---EDGDFKALDDLL 237

Query: 241 LPMDTAVEALPEVNVIPELMTLIQHGQAVQ--VSGAPSDGM-VRITGGEQK--LFLGVGE 295
           +PMDTAV  LP V +         +GQ+V+   S A  +G+  R+  G+    +FLGVGE
Sbjct: 238 IPMDTAVSRLPFVTINDAERNRFDNGQSVKGTCSEALGEGVSYRVYHGDDTSGVFLGVGE 297

Query: 296 --IDDNGK--------VAPKRLVVY 310
             +D   +        V PKR VVY
Sbjct: 298 GVLDPKDQGIPKQEVFVNPKRRVVY 322