Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., tRNA pseudouridine 55 synthase from Agrobacterium fabrum C58

 Score =  186 bits (473), Expect = 5e-52
 Identities = 113/313 (36%), Positives = 168/313 (53%), Gaps = 17/313 (5%)

Query: 3   RRRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEAT 62
           R+ KGR I G ++LDKP    S +A+ K+K L+ A+KAGH G LDPLA+GMLPI LG+AT
Sbjct: 10  RKPKGRPISGWLILDKPLDFGSTEAVSKIKWLFNAQKAGHAGTLDPLASGMLPIALGDAT 69

Query: 63  KFSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQVP 122
           K   +++D  K Y      GE+  T D +G+VV++     +   +   +  + G   Q P
Sbjct: 70  KTVPYVMDGRKIYEFTVTWGEQRATDDLEGEVVESSDQRPEEQAIRDILPNYTGVIMQTP 129

Query: 123 SMFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRF------EGDEVEMEVHCSKG 176
             FSA+K  G   Y+ AR G     E  +I   E+E+HR       + D    EV C KG
Sbjct: 130 PQFSAIKIAGERAYDLARDG-----ETVEIPAREVEIHRLTLLACPDADTAHFEVECGKG 184

Query: 177 TYIRTIVDDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVL 236
           TY+R +  D+G  LGC  H++ LRR  VA +  + MV LE L AL     RDE+   + L
Sbjct: 185 TYVRALARDMGRDLGCFGHISELRRTMVAPFGEDMMVPLETLTALEAIEDRDER--LEAL 242

Query: 237 DPLLLPMDTAVEALPEVNVIPELMTLIQHGQAVQVSG--APSDGMVRITGGEQKLFLGVG 294
           D  L+    A+ +LP + +  +    ++ G  + + G  AP++        + KL + +G
Sbjct: 243 DAFLIDTAEALSSLPRLIINDDQAHRLKMGNPILLRGRDAPANHPEAYATAQGKL-VAIG 301

Query: 295 EIDDNGKVAPKRL 307
           EI + G+  PKR+
Sbjct: 302 EIGE-GEFRPKRV 313