Pairwise Alignments

Query, 898 a.a., translation initiation factor IF-2 from Vibrio cholerae E7946 ATCC 55056

Subject, 961 a.a., Translation initiation factor IF-2 from Azospirillum sp. SherDot2

 Score =  680 bits (1754), Expect = 0.0
 Identities = 417/972 (42%), Positives = 573/972 (58%), Gaps = 126/972 (12%)

Query: 38  SEDEKQKLLAHLRKEHGDATGSEPTRLTLQRKTRSTLSVNAGGGKSKNVQVEVRKKRTYV 97
           S D+ QK + HL       TG+   +L  ++   + +  +   G+SK V VEV++KR +V
Sbjct: 4   SNDQDQKKVLHL-------TGASKGKLESKKPVETQVRQSFSHGRSKAVTVEVKRKR-HV 55

Query: 98  KRSSVEDEA----------------------------------TREAEEAAMRAA----- 118
           ++ +V   A                                  TRE  E+ +RA      
Sbjct: 56  EKGAVPGVADGGAAARQAAQGLPMRGAQGQRPRGGGAPAGRQLTREELESRLRALRGAAA 115

Query: 119 -EEQAKREAEEAAQRAAEEKAKREAEEAAKREAEAKRMAEEKAKRETQAATQPRS----- 172
            EEQ + +AEE   RA    A+ EA  A   E EA   A         AA  P       
Sbjct: 116 FEEQRRIDAEEEVARAEARAAEAEARAAQAAEDEAAAPAAPSEAAAPAAAAAPSDAPAPA 175

Query: 173 -------------------DEEKLKQEAARK-EAEALKRRQEEEARRK-AEEESRRQLEK 211
                              DE +  QE  RK  AEA +RR+EEEA+RK AE+  RR  E 
Sbjct: 176 APEMPPIILDADTLRQRELDEMRAIQEEDRKIAAEAERRRKEEEAKRKEAEDAKRRDAEP 235

Query: 212 V-RELAEKNGERWSADKE--------TVGDMQENTDYHVTTSRYA------------REA 250
             R    ++G R  A ++          GD +         +  A              A
Sbjct: 236 APRRDGARDGARDGAGRDGARPVGARPAGDQRPGGPAARPAADAAPGRPQPGVGAPPARA 295

Query: 251 EDEADLHEEGAR----------------------RRSTKANKRKMSSRDDNQERDSRPRG 288
           E+E D   +G R                      R+ TK    +  S DD  +R      
Sbjct: 296 EEEDDNRRKGGRGGAPAKAAPARPAAKAPAGADRRKGTKLTVSQALS-DDGSDRTRSLAA 354

Query: 289 GKAGRKGRINKPMSMQHGFDKTAVVAKADVVVGETIVVSELAQKMSVKATEVIKVMMKMG 348
            +  R+    + MS Q    +TA V + DVV+ E I V ELA +M+ +  +VIK +M+MG
Sbjct: 355 VRRARERERLRQMSRQ----ETAKVTR-DVVLPEVITVQELANRMAERGADVIKALMRMG 409

Query: 349 AMATINQVIDQETAQLVAEEMGHKVVLRKENELEEAILSDRDDKFEEVSRAPVVTIMGHV 408
            MATINQ ID +TA+L+  E GH+V    E+++E  + +  ++    V R PVVTIMGHV
Sbjct: 410 VMATINQTIDADTAELLITEFGHRVRRVSESDVEIGLRATEEEGAVLVPRPPVVTIMGHV 469

Query: 409 DHGKTSTLDYIRRTHVASGEAGGITQHIGAYHVETPNGM-ITFLDTPGHAAFTAMRARGA 467
           DHGKTS LD +R+T V SGEAGGITQHIGAY V+  +G  ITF+DTPGHAAFT MRARGA
Sbjct: 470 DHGKTSLLDALRQTDVVSGEAGGITQHIGAYQVQLESGAKITFIDTPGHAAFTEMRARGA 529

Query: 468 QATDIVVLVVAADDGVMPQTVEAIQHAKAAGVPLIVAVNKIDKDTANPDNVKTELSQYNV 527
             TD+VVLVVAA+DGVMPQT+EAI+HAKAA VP+IVA+NK D   A P+ V+ EL Q+ +
Sbjct: 530 NVTDVVVLVVAANDGVMPQTIEAIRHAKAAKVPIIVAINKCDLPDAKPERVRQELLQHEL 589

Query: 528 MPEEWGGDNMFVHISAKQGTNIDGLLEAILLQAEVLELKAVKQGMASGVVIESRLDKGRG 587
           + EE GGD + V +SAK   N+  L EAILLQAE+LEL+A  +  A GVVIE++L++GRG
Sbjct: 590 VVEEMGGDVLDVEVSAKAKRNLSKLEEAILLQAEILELRANPERAAEGVVIEAKLERGRG 649

Query: 588 PVATVLVQSGTLRKGDIVLCGQEYGRVRAMRDEVGNEVEEAGPSIPVEILGLSGVPAAGD 647
            VATVLVQ GTL+ GD+ + G E+GRVRA+ ++ G  V EA P++PVE+LGL+G P AGD
Sbjct: 650 SVATVLVQRGTLKVGDVFVTGAEWGRVRALINDRGQNVNEAAPAVPVEVLGLNGTPMAGD 709

Query: 648 EATVVRDERKAREVANYRAGKFREVKLARQQKSKLENMFSNMTAGDVAELNIVLKADVQG 707
           + +VV  E +ARE+A +R  K RE  +A   +  L++MFS + AG+  EL +V+K DVQG
Sbjct: 710 DFSVVESEARAREIAEFRQRKKREAAVAASARGSLQDMFSRIQAGEAKELPVVIKGDVQG 769

Query: 708 SVEAIADSLTKLSTD--EVKVNIVGSGVGGITETDAVLAAASNAIVVGFNVRADASARRM 765
           S+EAIA SL KL+ +  EVKV ++ + VG I E+D  LA ASNA+++GFNVRA+  AR +
Sbjct: 770 SIEAIASSLEKLTAENTEVKVRVLHNSVGAINESDITLANASNAMIIGFNVRANPQARDL 829

Query: 766 IEAENIDLRYYSIIYQLIDEVKQAMSGMLSPEFKQEIIGLAEVRDVFKSPKLGAIAGCMV 825
            + + +++RYYSIIY +ID+VK A++G+LSP  ++  IG A +R+VF   K+G +AGCMV
Sbjct: 830 AKRDGVEIRYYSIIYNVIDDVKAALTGLLSPTLRERFIGYATIREVFNITKVGKVAGCMV 889

Query: 826 TEGVIKRNAPIRVLRDNVVIYEGELESLRRFKDDVAEVKNGYECGIGVKNYNDVRVGDQI 885
           T+G +KR A +R+LRDNVVI+EG L++L+RFKD+V +V+ GYECG+  +NY++++ GDQI
Sbjct: 890 TQGTVKRGAGVRLLRDNVVIHEGTLKTLKRFKDEVKDVREGYECGMAFENYDNIQAGDQI 949

Query: 886 EVFETIEIQRTI 897
           E FE  EI R +
Sbjct: 950 EAFEIDEIAREL 961