Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 530 a.a., Transcription termination/antitermination protein NusA from Xanthobacter sp. DMC5

 Score =  394 bits (1012), Expect = e-114
 Identities = 205/482 (42%), Positives = 314/482 (65%), Gaps = 4/482 (0%)

Query: 4   EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
           E+L + +AV+ EK++ R  +  A+E A+A + + +Y  E D+   I+ +TG     R  L
Sbjct: 10  ELLQIADAVAREKSIDRSIVIAAMEDAIAKAARSRYGQETDIHADINPRTGELRLARHLL 69

Query: 64  VVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123
           VV+ VE+   EI+ + A   + + Q+GD I D +    F RI  Q+AKQVIVQKVREAER
Sbjct: 70  VVDEVENTATEITLDGARRHNPAAQVGDTIADTLPPFDFGRIAAQSAKQVIVQKVREAER 129

Query: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183
            +  +++ D  G+++ G+VK+V    V++DLG   E ++ R++ LPRE  + GDR+R  +
Sbjct: 130 DRQYDEYKDRIGDVLNGLVKRVEYGNVVVDLGRG-EGILRRDELLPRETVKTGDRIRAYI 188

Query: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243
           Y V  E RG Q+F++R+ P+ +A+LF  EVPEI + ++E+KA ARDPGSRAKIAV + D+
Sbjct: 189 YDVRREPRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIAVISRDQ 248

Query: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303
            +DPVGACVGMRG+RVQAV  EL GE+IDI+ W+ + A F++NA+APA+V  +++DED  
Sbjct: 249 SVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNPDIATFIVNALAPAEVVKVVLDEDRE 308

Query: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363
            +++ V    L+ AIGR GQNVRLA+QLTGW++++MT  +  ++ Q+E     + F + L
Sbjct: 309 RIEVVVPDAQLSLAIGRRGQNVRLATQLTGWDIDIMTEQEESERRQKEFAERTKMFSEAL 368

Query: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423
           D+++   +LL  EGF+++EEIAYVP++EL  ++G DED A EL+SRA + L  +  A + 
Sbjct: 369 DLDEMMGQLLTSEGFTSVEEIAYVPISELASIEGFDEDTAAELQSRALKHLAEVEEALDA 428

Query: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGELIM 483
             + L   +++  + G+   M        + T+EDLA    DDL    G +E++ GE I 
Sbjct: 429 RRKELGVEDEVKDVPGVTSKMLVAFGENDIKTVEDLAGCATDDL---IGWSERKDGETIR 485

Query: 484 AA 485
            A
Sbjct: 486 HA 487