Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 497 a.a., Transcription termination protein NusA from Variovorax sp. SCN45

 Score =  465 bits (1197), Expect = e-135
 Identities = 235/498 (47%), Positives = 356/498 (71%), Gaps = 5/498 (1%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60
           M++E+L +V+A+S EK V R+ +F A+E+ALA +TKK ++ ++D+RV++DR +G +ETFR
Sbjct: 1   MNREMLMLVDAISREKNVERDVVFGAVESALAQATKKLHQGDVDIRVSVDRDSGDYETFR 60

Query: 61  RWLVVEN---VEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQK 117
           RW VV +   ++ P +EI    A  +   +++G+YIE+ +ESV   RI    AKQVI+QK
Sbjct: 61  RWHVVPDEAGLQLPDQEILLFEAKEEMSDIEVGEYIEEAVESVPIGRIGAMAAKQVILQK 120

Query: 118 VREAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGD 177
           +R+AER  ++  F+    ++  G VK++++  +I++ G   E  + R + + +EN R GD
Sbjct: 121 IRDAEREMLLNDFMSRGDKIFVGTVKRLDKGDIIVEAGR-VEGRLRRSEMIAKENLRNGD 179

Query: 178 RVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIA 237
           RVR ++ +V    RG  + ++RS PE + ELFR EVPEI + L+E+K+ ARDPGSRAKIA
Sbjct: 180 RVRAMIMEVDLTLRGAPIILSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDPGSRAKIA 239

Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASII 297
           V ++DKR+DP+G CVG+RG RV AV+ EL GER+DIVLW ++PAQFVI A+APA+V+SI+
Sbjct: 240 VLSHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIV 299

Query: 298 MDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIE 357
           +DE+ H+MD+ V+ +NLA AIGR GQNVRLAS LTGW++N+M   +  +K   E+ AS +
Sbjct: 300 VDEEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDANESAQKQATETDASRK 359

Query: 358 NFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTI 417
            FM+ LD++++ A++L+ EGF++LEE+AYVP++E+L+++  DED  +ELRSRAK+AL T+
Sbjct: 360 LFMEKLDVDEEIADILISEGFNSLEEVAYVPISEMLEIEAFDEDTINELRSRAKDALLTM 419

Query: 418 ALAKEESFEGL-EPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQ 476
            +AKEE  EG  + ++DL  L GL+ ++  KL   GV T +DLAD  VD+L  I G +  
Sbjct: 420 EIAKEEGVEGAPQVSQDLHDLEGLDPELIPKLVEAGVNTRDDLADLAVDELTEITGHSAD 479

Query: 477 RAGELIMAARNICWFGED 494
            A  LI+ AR   + G++
Sbjct: 480 DAKALILKAREHWFAGQE 497