Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 524 a.a., Transcription termination protein NusA from Sphingobium sp. HT1-2

 Score =  395 bits (1016), Expect = e-114
 Identities = 226/516 (43%), Positives = 324/516 (62%), Gaps = 26/516 (5%)

Query: 4   EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
           E++A+  +V++EK + +  + EA+E A+  + + +Y  E D+R  +D  +G    +R   
Sbjct: 11  ELIAIANSVASEKMIDKAIVIEAMEDAIQRAARARYGAENDIRAKLDPDSGDLRLWRVVE 70

Query: 64  VVENVEHPTKEISF-EAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAE 122
           VVE VE   K++   +AA    D+V +GD+I D + ++   RI  Q+AKQVI QKVR+AE
Sbjct: 71  VVEVVEDYFKQVDLKQAAKLKKDAV-VGDFIVDPLPAIDLGRIDAQSAKQVIFQKVRDAE 129

Query: 123 RAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGL 182
           R +  ++F D  GE++TGVVK V    V+++LG  AE VI R+ Q+PRE  R GDR+R +
Sbjct: 130 RERQFDEFKDRVGEIITGVVKSVEFGHVVVNLGR-AEGVIRRDQQIPREVVRVGDRIRSV 188

Query: 183 LYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTND 242
           +  V  E RG Q+F++R+ PE + +LF  EVPEI + +I + AAARDPGSRAKI V + D
Sbjct: 189 VLNVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGVITIMAAARDPGSRAKIGVISRD 248

Query: 243 KRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDA 302
             IDPVGACVGM+G+RVQAV  E+ GE+IDI+ W ++ A FV+NA+ PA VA +++DE+ 
Sbjct: 249 SSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSEDTATFVVNALQPAQVARVVIDEEE 308

Query: 303 HSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKY 362
             +++ V  D L+ AIGR GQNVRLASQLTG  +++MT AD  +K Q+E ++  E F   
Sbjct: 309 ERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDIMTEADASEKRQKEFVSRSEMFQNE 368

Query: 363 LDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKE 422
           LD+++  ++LLV EGF  LEE+AYV + EL  ++G DEDLA EL+SRA+EAL     A  
Sbjct: 369 LDVDETLSQLLVAEGFGELEEVAYVSVEELAGIEGFDEDLAAELQSRAQEALDRREQAAR 428

Query: 423 ESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDL--------------E 468
           E  + L   + L  +  L   M   L   GV TL+DLAD   D+L               
Sbjct: 429 EERQALGVEDALADMPHLTEAMLVTLGKAGVKTLDDLADLATDELVQKKRVDQRRRKSDS 488

Query: 469 GIE---------GLTEQRAGELIMAARNICWFGEDA 495
           G E         GLT+++  E+IMAAR   + GE+A
Sbjct: 489 GNEDKGGILAAYGLTDEQGNEIIMAARAHWFEGEEA 524