Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., Transcription antitermination factor NusA, contains S1 and KH domains from Pseudomonas protegens RBAN4

 Score =  603 bits (1556), Expect = e-177
 Identities = 307/493 (62%), Positives = 394/493 (79%), Gaps = 3/493 (0%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60
           MSKE+L VVE+VSNEK VP   IFEALE ALAT+TKK++E E+D+RV I+R TG++ETFR
Sbjct: 1   MSKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVDLRVEINRHTGSYETFR 60

Query: 61  RWLVVE--NVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKV 118
           RW VVE  +++ P  E     A       ++GD IE++IES+ F RI  QTAKQVIVQKV
Sbjct: 61  RWTVVEEADLDDPAVETWLSKARETHPDAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKV 120

Query: 119 REAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDR 178
           REAERAQ+V+ + +  GE+++G VKKV R+ VI+DLGNNAEA++ RED + RE FR G R
Sbjct: 121 REAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVR 180

Query: 179 VRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAV 238
           +R LL ++  E RG QL ++R+ PEML ELFR+EVPEI E LIE+ AA+RDPGSRAKIAV
Sbjct: 181 LRALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAV 240

Query: 239 KTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIM 298
           ++ DKRIDP GAC+GMRG+RVQAVSGELGGER+DIVLWD+NPAQFVINAM+PA+VA+II+
Sbjct: 241 RSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMSPAEVAAIIV 300

Query: 299 DEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIEN 358
           DEDAH+MDIAV ADNLAQAIGR GQNVRLASQLTGW LNVMT +D+Q K Q E+   + N
Sbjct: 301 DEDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRN 360

Query: 359 FMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIA 418
           F+  L+++++ A++LV+EGF++LEEIAYVP+ E+L++DG DED+ +ELR+RAK+ L T A
Sbjct: 361 FIDELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKA 420

Query: 419 LAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRA 478
           +A EE      PAEDLL+L G+++D+A +LA +GV T EDLA+Q +DDL  I+G+ + RA
Sbjct: 421 IATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDRA 480

Query: 479 GELIMAARNICWF 491
           G+LIMAAR   WF
Sbjct: 481 GKLIMAAR-AHWF 492