Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., transcription termination/antitermination protein NusA from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  205 bits (521), Expect = 3e-57
 Identities = 122/401 (30%), Positives = 228/401 (56%), Gaps = 12/401 (2%)

Query: 16  KAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR-RWLVVENVEH--PT 72
           K + R  +   LE    T  +KK+  + +  + ++ + G  E +R R +V +N E     
Sbjct: 17  KNIDRPTMMRILEDVFRTMIRKKWSTDENFDIILNVEKGDLEIWRNREIVDDNSEDIWDH 76

Query: 73  KEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAERAQIVEQFID 132
            +IS   A   +   ++G+ + ++++   F R    TA+Q ++Q++++ E+  + +++ D
Sbjct: 77  DKISLSDARKIEPDFEVGEEVSEEVKLEDFGRRAVLTARQTLIQRIKDMEKELLFQKYKD 136

Query: 133 NEGELVTGVVKKV-NRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLLYKVAPEAR 191
             GE+++G V +V NRE ++LD   N E +I + +Q+P++ +R GD VR ++ +V     
Sbjct: 137 LVGEIISGEVYQVWNREVLLLDQEEN-ELLIPKAEQIPKDRYRKGDVVRAVVQRVEIVNG 195

Query: 192 GFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDKRIDPVGAC 251
             ++ ++R+ P  L  LF  EVPEI + LI +K   R+PG RAK+AV++ D RIDPVGAC
Sbjct: 196 NPKIILSRTSPTFLERLFENEVPEIFDGLIAIKKIVREPGERAKVAVESFDDRIDPVGAC 255

Query: 252 VGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAHSMDIAVEA 311
           VGM+G+R+ ++  EL  E ID++ + +N   ++  A++PA ++S+ +DE+   + + ++ 
Sbjct: 256 VGMKGSRIHSIVRELENENIDVINYTENLELYIQRALSPAKISSMKIDEENGRVSVFLKP 315

Query: 312 DNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYLDIEQDFAE 371
           D ++ AIG+ GQN++LAS+L   E++V      ++    E   S+E F    +IE     
Sbjct: 316 DQVSLAIGKGGQNIKLASRLVDMEIDV-----FRESETYEEDISLEEFTD--EIEDWVIA 368

Query: 372 LLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKE 412
            L   G  T + +  V   +LL    ++E+  +++ S  +E
Sbjct: 369 ELRRIGLDTAKSVLAVSKEDLLRRTELEEETIEDVLSILRE 409