Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 499 a.a., Transcription termination protein NusA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  466 bits (1200), Expect = e-136
 Identities = 239/498 (47%), Positives = 350/498 (70%), Gaps = 6/498 (1%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60
           M++E+L +++A+S EK V R+ +  A+E ALA++TKK Y+ ++D+RVA+D  TGA+ETFR
Sbjct: 1   MNREMLMLIDAISREKNVERDVVLGAVELALASATKKLYKGDVDIRVAMDPDTGAYETFR 60

Query: 61  RWLVVEN---VEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQK 117
           RWLVV +   +++P  E     A  +   ++ GDYIE  +ESV   RI    AKQVI+QK
Sbjct: 61  RWLVVPDEAGLQNPDAEEMLSDAREELADIEEGDYIEKPVESVPIGRIGAMAAKQVILQK 120

Query: 118 VREAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGD 177
           +R+AER  ++  F+    ++  G VK++++  +I++ G   E  + R + +P+ENFR GD
Sbjct: 121 IRDAEREMLLNDFMSRGDKIFVGTVKRMDKGDLIVESGR-VEGRLKRGEMIPKENFRTGD 179

Query: 178 RVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIA 237
           RVR ++ +V    RG  + ++RS P  + ELFR EVPEI + L+E+K  ARDPGSRAKIA
Sbjct: 180 RVRAMIMEVDLTLRGAPILLSRSAPSFMIELFRQEVPEIEQGLLEIKTCARDPGSRAKIA 239

Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASII 297
           V + DKRIDP+G CVG+RG+RV  V+ EL GER+DIVLW ++PAQFVI A+APA+V SI+
Sbjct: 240 VHSFDKRIDPIGTCVGVRGSRVNGVTNELAGERVDIVLWSEDPAQFVIGALAPANVVSIV 299

Query: 298 MDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIE 357
           +DE+ H+MD+ V+ +NLA AIGR GQNVRLAS+LTGW +N+MT  +  +K  EE+    +
Sbjct: 300 VDEERHAMDVVVDEENLAIAIGRGGQNVRLASELTGWRINIMTADESAQKQAEEADGIRK 359

Query: 358 NFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTI 417
            FM  LD++Q+ A++L+EEGF++LEE+AYVP+ E+L+++  DED  +ELR+RAK+AL T+
Sbjct: 360 VFMAKLDVDQEIADILIEEGFTSLEEVAYVPLQEMLEIESFDEDTVNELRTRAKDALLTM 419

Query: 418 ALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQR 477
            +A+EES E  E ++DL  L G+  ++  KLA  GV T ++LAD   D+L  I   T + 
Sbjct: 420 EIAREESVE--EVSQDLRDLEGVTPELIAKLADAGVHTRDELADLATDELTDITAQTPEE 477

Query: 478 AGELIMAARNICWFGEDA 495
           A  LIM AR   + G++A
Sbjct: 478 ATALIMLARAHWFTGDEA 495