Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., transcription termination/antitermination protein NusA from Magnetospirillum magneticum AMB-1

 Score =  419 bits (1077), Expect = e-121
 Identities = 223/493 (45%), Positives = 324/493 (65%), Gaps = 5/493 (1%)

Query: 4   EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
           E+L V +AV+ +K + R+ + EA+E A+  + + KY  E D+R  IDRKTG  +  R   
Sbjct: 11  ELLQVADAVARDKGIDRDEVLEAMEQAIQKAGRSKYGHEHDIRAHIDRKTGEIQLARYIE 70

Query: 64  VVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123
           VVE VE+   + + +          +GD++ D +  + F RI  QTAKQVIVQKVR+AER
Sbjct: 71  VVEEVENEATQQTLKQVLKKKPDAVVGDFLVDPLPPIDFGRIAAQTAKQVIVQKVRDAER 130

Query: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183
            +   ++ D  GE+  G+VK+V    VI+DLG  AEA++ R++ +PRE FR GDRVR  +
Sbjct: 131 QRQFNEYKDRVGEISNGLVKRVEFGNVIVDLGR-AEALLRRDELIPRETFRTGDRVRAYI 189

Query: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243
           Y V  E RG Q+F++R+ P  +A+LF  EVPEI + +IE+KA ARDPGSRAKIAV ++D 
Sbjct: 190 YDVRQEPRGPQIFLSRTHPIFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIAVLSHDS 249

Query: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303
            IDPVGACVGMRG+RVQAV  EL GE+IDI+ W  + A FV+N +APA+V  +++DE+A 
Sbjct: 250 SIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSPDVATFVVNGLAPAEVTKVVLDEEAG 309

Query: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363
            +++ V  D L+ AIGR GQNVRLASQLT W ++++T A+  ++  EE  +    F++ L
Sbjct: 310 RIEVVVPDDQLSLAIGRRGQNVRLASQLTQWNIDILTEAEESERRTEEFRSRSNMFIQAL 369

Query: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423
           D++   A LLV EGFS++EE+AYVP  ++ D++G DE++A+EL++RA+  L       ++
Sbjct: 370 DVDDVIAHLLVTEGFSSVEEVAYVPAEDIADIEGFDENVAEELQTRARNFLAEQDERYDQ 429

Query: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVD---DLEGIEGLTEQRAGE 480
             + +  A+++ A+ GL   M  KL  KG+ TL+DL D   D   D+ G + +TE  A  
Sbjct: 430 MRKDMGVADEMAAIEGLAPSMLVKLGDKGIKTLDDLGDLAGDELIDILGKDAMTEDEANA 489

Query: 481 LIMAARNICWFGE 493
           +IMAAR   WF E
Sbjct: 490 VIMAAR-AHWFEE 501