Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 500 a.a., Transcription termination protein NusA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  769 bits (1985), Expect = 0.0
 Identities = 390/500 (78%), Positives = 444/500 (88%), Gaps = 5/500 (1%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60
           M+KEILAVVEAVSNEKA+PRE+IFEALE+ALAT+TKKKYE EIDVRV IDRK+G F+TFR
Sbjct: 1   MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFR 60

Query: 61  RWLVVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVRE 120
           RWL+VE V  PTKEI+ EAA F+D+S+ +GDY+EDQIESVTFDRITTQTAKQVIVQKVRE
Sbjct: 61  RWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120

Query: 121 AERAQIVEQFIDNEGELVTGVVKKVNRETVILDL-----GNNAEAVILREDQLPRENFRP 175
           AERA +V+QF D EGE+VTGVVKKVNR+ + L++       NAEAVILRED LPRENFRP
Sbjct: 121 AERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRP 180

Query: 176 GDRVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAK 235
           GDR+RG+LY V PEARG QLF+TRSKPEML ELFR+EVPEIGEE+IE+KAAARDPGSRAK
Sbjct: 181 GDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 240

Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVAS 295
           IAVKTNDKRIDPVGACVGMRGARVQAVS ELGGERIDIVLWDDNPAQFVINAMAPADVAS
Sbjct: 241 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 300

Query: 296 IIMDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMAS 355
           I++DED H+MDIAVEA NLAQAIGRNGQNVRLASQL+GWELNVMTV DLQ KHQ E+ A+
Sbjct: 301 IVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAA 360

Query: 356 IENFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALT 415
           IE F KYLDI+++FA +LVEEGFSTLEE+AYVPM ELL++DG+DE   + LR RAK AL 
Sbjct: 361 IEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALA 420

Query: 416 TIALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTE 475
           T+A  +E S    +PA+DLL L GL+RDMAFKLAA+GV TLEDLADQG+DDL  IEGLT+
Sbjct: 421 TLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTD 480

Query: 476 QRAGELIMAARNICWFGEDA 495
           ++AGELIMAARNICWFG++A
Sbjct: 481 EKAGELIMAARNICWFGDEA 500