Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., transcription elongation factor NusA (NCBI) from Escherichia coli BW25113

 Score =  780 bits (2015), Expect = 0.0
 Identities = 391/495 (78%), Positives = 448/495 (90%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60
           M+KEILAVVEAVSNEKA+PRE+IFEALE+ALAT+TKKKYE EIDVRV IDRK+G F+TFR
Sbjct: 1   MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60

Query: 61  RWLVVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVRE 120
           RWLVV+ V  PTKEI+ EAA ++D+S+ LGDY+EDQIESVTFDRITTQTAKQVIVQKVRE
Sbjct: 61  RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120

Query: 121 AERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVR 180
           AERA +V+QF ++EGE++TGVVKKVNR+ + LDLGNNAEAVILRED LPRENFRPGDRVR
Sbjct: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180

Query: 181 GLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKT 240
           G+LY V PEARG QLF+TRSKPEML ELFR+EVPEIGEE+IE+KAAARDPGSRAKIAVKT
Sbjct: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240

Query: 241 NDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDE 300
           NDKRIDPVGACVGMRGARVQAVS ELGGERIDIVLWDDNPAQFVINAMAPADVASI++DE
Sbjct: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300

Query: 301 DAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFM 360
           D H+MDIAVEA NLAQAIGRNGQNVRLASQL+GWELNVMTV DLQ KHQ E+ A+I+ F 
Sbjct: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360

Query: 361 KYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALA 420
           KYLDI++DFA +LVEEGFSTLEE+AYVPM ELL+++G+DE   + LR RAK AL TIA A
Sbjct: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA 420

Query: 421 KEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGE 480
           +EES    +PA+DLL L G++RD+AFKLAA+GV TLEDLA+QG+DDL  IEGLT+++AG 
Sbjct: 421 QEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGA 480

Query: 481 LIMAARNICWFGEDA 495
           LIMAARNICWFG++A
Sbjct: 481 LIMAARNICWFGDEA 495