Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 497 a.a., NusA antitermination factor from Kangiella aquimarina DSM 16071

 Score =  632 bits (1631), Expect = 0.0
 Identities = 323/494 (65%), Positives = 398/494 (80%), Gaps = 3/494 (0%)

Query: 2   SKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRR 61
           +KEIL VVEAVSNEK V  E IF A+E ALAT+TKKK+ ++IDVRV IDR TG ++T+RR
Sbjct: 3   NKEILLVVEAVSNEKDVQPEVIFGAIEAALATATKKKHGVDIDVRVDIDRDTGDYDTYRR 62

Query: 62  WLVVEN--VEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVR 119
           W VV +  VE P  E +  AA  +D  +QLGDY+E+QIES+ F RI  QTAKQVIVQKVR
Sbjct: 63  WTVVADDAVEDPLTETTLSAAQVEDPEIQLGDYVEEQIESIEFGRIAAQTAKQVIVQKVR 122

Query: 120 EAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRV 179
           EAERA+ VE F D  GELVTGVVKKV R+ + +DLGNNAEAVI RE+ +PRE  R GDRV
Sbjct: 123 EAERAKTVEAFRDKVGELVTGVVKKVTRDYIFIDLGNNAEAVIQREEMMPRETVRAGDRV 182

Query: 180 RGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVK 239
           RGLLY ++ E RG QLF++R++PEML ELFR+EVPEIGEE+IE+K AARDPGSRAK+AVK
Sbjct: 183 RGLLYAISTENRGPQLFVSRTRPEMLEELFRIEVPEIGEEVIEIKGAARDPGSRAKVAVK 242

Query: 240 TNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMD 299
           TNDKRIDPVGACVGMRGARVQAV+GEL GERIDIVL+DDNPAQ+VINAMAPA+V SI++D
Sbjct: 243 TNDKRIDPVGACVGMRGARVQAVTGELNGERIDIVLYDDNPAQYVINAMAPAEVVSIVVD 302

Query: 300 EDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENF 359
           ED+ SMDIAV  D LAQAIGRNGQN+RLAS+LTGWELNVMT  D   K+Q E+ + +  F
Sbjct: 303 EDSRSMDIAVSEDQLAQAIGRNGQNIRLASELTGWELNVMTEEDFATKNQSETESIVSMF 362

Query: 360 MKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIAL 419
           +  L +++D A++LV+EGF+TLEE+AYVP +E+L+++G DEDL + L+SRAK+ L T A+
Sbjct: 363 VADLGVDEDLADILVQEGFTTLEEVAYVPQSEMLEIEGFDEDLVEALKSRAKDVLLTKAI 422

Query: 420 AKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAG 479
           A EE  E  EPAEDLL + G++R +AF LA+KG+ T+EDLA+Q VD+L  I+ L E+RA 
Sbjct: 423 ASEEQLEEAEPAEDLLNMEGMDRHLAFVLASKGIVTMEDLAEQSVDELVEIDELDEERAA 482

Query: 480 ELIMAARNICWFGE 493
           +LIM AR   WF E
Sbjct: 483 KLIMTAR-APWFEE 495