Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., transcription termination/antitermination protein NusA from Fusobacterium nucleatum SB010

 Score =  227 bits (579), Expect = 5e-64
 Identities = 122/343 (35%), Positives = 208/343 (60%), Gaps = 5/343 (1%)

Query: 2   SKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRR 61
           SK  L  ++ +  EK + +E + EA+E AL  + KK Y  + +V V +DR+ G  + F  
Sbjct: 6   SKNFLEALDELEKEKGISKESVLEAIELALLAAYKKNYGEDENVEVTVDRENGDIKVFAS 65

Query: 62  WLVV--ENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVR 119
             VV  +++  P +EIS E A      V++GD ++ +++   F R   Q  KQ+++QKVR
Sbjct: 66  KTVVAADDLLDPNEEISLEDAKKIKKRVKIGDILKFEVDCENFRRNAVQNGKQIVIQKVR 125

Query: 120 EAERAQIVEQFIDNEGELVTGVVKKV-NRETVILDLGNNAEAVILREDQLPRENFRPGDR 178
           EAER  I  +F + E  +VTG+++++ NR+ + +++ +  E ++   +Q   + +R G+R
Sbjct: 126 EAEREHIFNKFKEREDSIVTGIIRRIDNRKNIFIEI-DGVELILPPAEQSVSDIYRVGER 184

Query: 179 VRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAV 238
           ++  +  V   ++  ++ I+R    +L +LF +E+PEI   +IE+K+ AR+ GSRAK+AV
Sbjct: 185 IKVYVLSVEKTSKFPKILISRRNEGLLRKLFEIEIPEITSGIIEIKSVAREAGSRAKVAV 244

Query: 239 KTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIM 298
            +    ID +GAC+G +GAR++ +  EL GERIDIV W     +FV   ++PA V S+ +
Sbjct: 245 YSAVPNIDTIGACIGQKGARIKNIVDELNGERIDIVEWKPVVEEFVSAVLSPAVVESVTI 304

Query: 299 DEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTV 341
            ED  +  + VE   L+ AIG+NGQN RLA++LTG  +++  +
Sbjct: 305 LEDG-TARVLVEPSQLSLAIGKNGQNARLAARLTGMRVDIKVI 346