Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 501 a.a., transcription termination factor NusA from Erwinia tracheiphila SCR3

 Score =  751 bits (1938), Expect = 0.0
 Identities = 380/501 (75%), Positives = 441/501 (88%), Gaps = 6/501 (1%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60
           M+KEILAVVEAVSNEK++PRE+IFEALE+ALAT+TKKKYE EIDVRV+IDRK+G F+TFR
Sbjct: 1   MNKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFR 60

Query: 61  RWLVVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVRE 120
           RWLVVE V  PT+EI+ EAA FDD S+  GD++EDQIESVTFDRITTQTAKQVIVQKVRE
Sbjct: 61  RWLVVEEVTMPTREITLEAARFDDGSLNAGDFVEDQIESVTFDRITTQTAKQVIVQKVRE 120

Query: 121 AERAQIVEQFIDNEGELVTGVVKKVNRETVILDL------GNNAEAVILREDQLPRENFR 174
           AERA +V+QF + EGE++TGVVKKVNR+ + L++        NAEAVI+RED LPRENFR
Sbjct: 121 AERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPNDGSSTNAEAVIIREDMLPRENFR 180

Query: 175 PGDRVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRA 234
           PGDR+RG+LY V PEARG QLF++RSKPEML ELFR+EVPEI EE++E+K AARDPGSRA
Sbjct: 181 PGDRIRGVLYAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIAEEVLEIKTAARDPGSRA 240

Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVA 294
           KIAVKTNDKRIDPVGACVGMRGARVQAVS ELGGERIDIVLWDDNPAQFVINAMAPADVA
Sbjct: 241 KIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVA 300

Query: 295 SIIMDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMA 354
           SI++DED H+MDIAVEA NLAQAIGRNGQNVRLASQL+GWELNVMTV DLQ KHQ E+ A
Sbjct: 301 SIVVDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA 360

Query: 355 SIENFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEAL 414
           +I+ F ++LDI+++FA +LVEEGFS+LEE+AYVP++ELL++DG+DE+  + LR RAK AL
Sbjct: 361 AIDVFTRHLDIDEEFATILVEEGFSSLEELAYVPIHELLEIDGLDEETVEVLRDRAKNAL 420

Query: 415 TTIALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLT 474
           TT+AL K ES     PAEDLL L GL+R+MAFKLAA GV TLEDLA+QGVDDL  IEGL+
Sbjct: 421 TTLALEKAESHGSNTPAEDLLNLEGLDREMAFKLAAAGVCTLEDLAEQGVDDLTDIEGLS 480

Query: 475 EQRAGELIMAARNICWFGEDA 495
            ++AGELIMAARNICWFG DA
Sbjct: 481 GEQAGELIMAARNICWFGNDA 501