Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 500 a.a., NusA antitermination factor from Enterobacter asburiae PDN3

 Score =  770 bits (1988), Expect = 0.0
 Identities = 389/500 (77%), Positives = 447/500 (89%), Gaps = 5/500 (1%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60
           M+KEILAVVEAVSNEK++PRE+IFEALE+ALAT+TKKKYE EIDVRV IDRK+G F+TFR
Sbjct: 1   MNKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFR 60

Query: 61  RWLVVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVRE 120
           RW++VE V  PTKEI+ EAA F+D+S+ +G+Y+EDQIESVTFDRITTQTAKQVIVQKVRE
Sbjct: 61  RWVIVEEVTQPTKEITLEAARFEDESLNVGEYVEDQIESVTFDRITTQTAKQVIVQKVRE 120

Query: 121 AERAQIVEQFIDNEGELVTGVVKKVNRETVILD-----LGNNAEAVILREDQLPRENFRP 175
           AERA +V+QF D EGE++TGVVKKVNR+ + L+     L  NAEAVILRED LPRENFRP
Sbjct: 121 AERALVVDQFRDQEGEIITGVVKKVNRDNISLEIKSEGLPGNAEAVILREDMLPRENFRP 180

Query: 176 GDRVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAK 235
           GDR+RG+LY V PEARG QLF+TRSKPEML ELFR+EVPEIGEE+IE+KAAARDPGSRAK
Sbjct: 181 GDRIRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAK 240

Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVAS 295
           IAVKTNDKRIDPVGACVGMRGARVQAVS ELGGERIDIVLWDDNPAQFVINAMAPADVAS
Sbjct: 241 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 300

Query: 296 IIMDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMAS 355
           I++DED H+MDIAVEA NLAQAIGRNGQNVRLASQL+GWELNVMTV DLQ KHQ E+ A+
Sbjct: 301 IVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAA 360

Query: 356 IENFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALT 415
           I+ F KYLDI++DFA +LVEEGFSTLEE+AYVPM ELL++DG+DE   + LR RAK ALT
Sbjct: 361 IDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALT 420

Query: 416 TIALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTE 475
           T+ALA+EES    +PA+DLL L GL+R +AFKLAA+GV TLEDLA+QGVDDL  IEGLT+
Sbjct: 421 TLALAQEESLGDKKPADDLLNLEGLDRAIAFKLAARGVCTLEDLAEQGVDDLADIEGLTD 480

Query: 476 QRAGELIMAARNICWFGEDA 495
           ++AGELIMAARNICWFG++A
Sbjct: 481 EKAGELIMAARNICWFGDEA 500