Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 496 a.a., transcription termination/antitermination protein NusA from Dickeya dadantii 3937

 Score =  761 bits (1964), Expect = 0.0
 Identities = 385/492 (78%), Positives = 439/492 (89%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60
           M+KEILAVVEAVSNEKAVPRE+IFEALETALAT+TKKKYE EIDVRV IDRKTG F+TFR
Sbjct: 1   MNKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFR 60

Query: 61  RWLVVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVRE 120
           RW VV  V  PT+EI+ EAA F++ S+ LG YIEDQIESVTFDRITTQTAKQVIVQKVRE
Sbjct: 61  RWQVVNEVTQPTREITLEAAQFEEPSIDLGGYIEDQIESVTFDRITTQTAKQVIVQKVRE 120

Query: 121 AERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVR 180
           AERA +V+QF + EGE+VTGVVKKVNR+ + LDLG+NAEAVI RED LPRENFRPGDR+R
Sbjct: 121 AERAMVVDQFREQEGEIVTGVVKKVNRDNISLDLGSNAEAVIGREDMLPRENFRPGDRIR 180

Query: 181 GLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKT 240
           G+LY V PEARG QLF++RS+PEML ELFR+EVPEIGEE+IE+KAAARDPGSRAKIAVKT
Sbjct: 181 GVLYAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240

Query: 241 NDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDE 300
           NDKRIDPVGACVGMRGARVQAVS ELGGERIDIVLWDDNPAQFVINAMAPADVASI++DE
Sbjct: 241 NDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300

Query: 301 DAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFM 360
           D H+MDIAVEA NLAQAIGRNGQNVRLASQL+GWELNVMT+ DLQ KHQ E+ A+I+ F 
Sbjct: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDIFT 360

Query: 361 KYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALA 420
           K+LDI+++FA  LVEEGFS+LEE+AYVP++EL ++DG+DE+  + LR RAK ALTT+ALA
Sbjct: 361 KHLDIDEEFATALVEEGFSSLEELAYVPIHELQEIDGLDEETIEALRERAKAALTTLALA 420

Query: 421 KEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGE 480
            EE+    +PAEDLL L+GL R++AFKLAA+GV TLEDLA+QGVDDL  IEGL E +AGE
Sbjct: 421 NEENRGNGQPAEDLLNLSGLSRELAFKLAARGVCTLEDLAEQGVDDLADIEGLDEAQAGE 480

Query: 481 LIMAARNICWFG 492
           LIMAARNICWFG
Sbjct: 481 LIMAARNICWFG 492