Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., transcription termination factor NusA from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  214 bits (544), Expect = 6e-60
 Identities = 127/398 (31%), Positives = 222/398 (55%), Gaps = 10/398 (2%)

Query: 13  SNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR-RWLVVENVEH- 70
           +  K V R  +   LE       +KKYE + +  V I+   G  E +R R +V +N E  
Sbjct: 14  ARSKNVDRPTMIRILEDVFRAMIRKKYETDENFDVIINADKGDLEIWRIREIVDDNSEDI 73

Query: 71  -PTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAERAQIVEQ 129
               +IS   A   +   ++G+   ++IE   F R     A+Q ++QK+++ E+  + +Q
Sbjct: 74  WDHDKISHSEAKKIEPDFEIGEETYERIELEDFGRRAVMMARQTLIQKIKDLEKDLLFQQ 133

Query: 130 FIDNEGELVTGVVKKV-NRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLLYKVAP 188
           + +  GE++T  V ++  RE +++D G   E ++ + +Q+P++ FR GD +R +++KV  
Sbjct: 134 YEELVGEIITAEVYQILGREMLLMD-GEGNELILPKGEQIPKDRFRKGDTIRSIVHKVEM 192

Query: 189 EARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDKRIDPV 248
                ++ ++R+ P  L  LF  EVPE+ + LI +K   R+PG RAK+AV++ D RIDPV
Sbjct: 193 VNGNPRIILSRTSPIFLERLFENEVPEVYDGLITIKKIVREPGERAKVAVESYDDRIDPV 252

Query: 249 GACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAHSMDIA 308
           GACVGM+G+R+ AV  EL  E ID++ + DN   +V  A++PA V+SI  +E+   + + 
Sbjct: 253 GACVGMKGSRIHAVVRELQNENIDVINYTDNLELYVSRALSPAKVSSIQANEEEKRLSVF 312

Query: 309 VEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYLDIEQD 368
           ++ D ++ AIG+ G N+RLAS+L G+E++V         ++EE    +  F    +IE  
Sbjct: 313 LKPDQVSLAIGKGGYNIRLASRLVGYEIDVFREL---SDYEEEEDVDLSEFSD--EIEGW 367

Query: 369 FAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADEL 406
             E L + G  T + +  +   +L     ++E+  +E+
Sbjct: 368 IIEELKKTGLDTAKSVLALSKEDLTRRTELEEETIEEI 405