Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., transcription termination/antitermination protein NusA from Bacteroides stercoris CC31F

 Score =  200 bits (509), Expect = 7e-56
 Identities = 118/410 (28%), Positives = 224/410 (54%), Gaps = 12/410 (2%)

Query: 3   KEILAVVEAVSNEKA---VPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETF 59
           +E +++++  S  K    + R  +   LE +  +   K +  + +  V ++   G FE +
Sbjct: 5   EETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIW 64

Query: 60  RRWLVV--ENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQK 117
           R   VV  E++E+P  +IS   A   D S ++G+ + D++    F R      +Q +  K
Sbjct: 65  RNREVVADEDLENPNLQISLSEARKIDASYEVGEEVTDEVNFAKFGRRAILNLRQTLASK 124

Query: 118 VREAERAQIVEQFIDNEGELVTGVVKKV-NRETVILDLGNNAEAVILREDQLPRENFRPG 176
           + E E+  I  ++ID  G ++   V ++  +E ++LD   N E ++ + +Q+P + +R G
Sbjct: 125 ILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKG 183

Query: 177 DRVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKI 236
           +  R ++ +V  +    ++ ++R+ P  L  LF +EVPEI + LI +K  AR PG RAKI
Sbjct: 184 ETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKI 243

Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASI 296
           AV++ D RIDPVGACVG++G+R+  +  EL  E ID++ +  N   F+  A++PA ++SI
Sbjct: 244 AVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKISSI 303

Query: 297 IMDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASI 356
            ++E+ H  ++ ++ + ++ AIG+ G N++LAS LT + ++V    D   +  E+    +
Sbjct: 304 RLNEEEHKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELD---EAVEDEDIYL 360

Query: 357 ENFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADEL 406
           + F    +I+    + +   G  T + +   P   L++   ++E+  DE+
Sbjct: 361 DEFRD--EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEV 408