Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 577 a.a., transcription termination factor NusA from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  379 bits (972), Expect = e-109
 Identities = 204/476 (42%), Positives = 303/476 (63%), Gaps = 12/476 (2%)

Query: 4   EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
           E+L + EAV+ EK + RE + EA+E A+    K +Y    D+R  ID KTG     R   
Sbjct: 12  ELLQIAEAVAREKNIEREIVIEAIEEAIQKGAKSRYGAHHDIRAKIDHKTGELSLTRHVT 71

Query: 64  VVENVEHPTKEISF----------EAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQV 113
           +VE+   P  E+            +A+  D ++V   +Y+E+ +    F R+ TQ A+QV
Sbjct: 72  IVEDDWMPEDELEEFNDSAMVRLKDASKRDPEAVVGKEYVEN-LPPFEFGRVQTQMARQV 130

Query: 114 IVQKVREAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENF 173
           +  KVREAERA   E+F D  GE+V G VK+V     I+DLG   E V+ R+  +PRE F
Sbjct: 131 VTGKVREAERANQYEEFKDRVGEIVNGTVKRVEYGNTIVDLGRG-EGVMRRDQSIPREVF 189

Query: 174 RPGDRVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSR 233
             GDR+R  +Y V PEA+G Q+ ++R+ P  +A+LF  EVPE+ + +IE++AAARD GSR
Sbjct: 190 NIGDRIRTYIYDVRPEAKGPQVMLSRAHPGFMAKLFAQEVPEVYDGVIEIRAAARDSGSR 249

Query: 234 AKIAVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADV 293
           AK+AV +ND  IDPVGACVGMRG+RVQAV  EL GE+IDI+ W+ +   F++NA+APA+V
Sbjct: 250 AKMAVLSNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWNPDEPTFIVNALAPAEV 309

Query: 294 ASIIMDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESM 353
           + +++DE+A  +++ V  + L+ AIGR GQNVRLASQLTGW+++++T A   ++ Q E  
Sbjct: 310 SKVVLDEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIITEAQDSERRQREFA 369

Query: 354 ASIENFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEA 413
                F + LD+++  A+LLV EGF+T+E++AYV   E+ +++G DE+ A+EL++RA+E 
Sbjct: 370 ERTGLFQEALDVDEVIAQLLVTEGFATVEDLAYVDPYEVSEIEGFDEETAEELQARAREY 429

Query: 414 LTTIALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEG 469
           L   A   +     L   + +L + G+   +A  L   GV T+EDLAD   D++ G
Sbjct: 430 LDKKAAELDAKRVELGVEDGVLQVPGVTLPIAVALGEGGVKTVEDLADLATDEIRG 485