Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 523 a.a., Transcription termination/antitermination protein NusA from Azospirillum sp. SherDot2

 Score =  416 bits (1070), Expect = e-121
 Identities = 235/504 (46%), Positives = 327/504 (64%), Gaps = 18/504 (3%)

Query: 4   EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
           E+L V +AV+ EK + R+ + EA+E A+  + + KY  E D+R  IDRKTG     R   
Sbjct: 2   ELLQVADAVAREKNIDRDEVLEAMEQAIQKAGRSKYGHEHDIRARIDRKTGDIHLTRHLE 61

Query: 64  VVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123
           VVE VE+   +++   A       +LGD++ D +  + F RI  QTAKQVIVQKVR+AER
Sbjct: 62  VVETVENEATQVTLPYAQKRKAGAKLGDFLVDPLPPIDFGRIAAQTAKQVIVQKVRDAER 121

Query: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183
            +   ++ D  GE+V G+VK+V    V +DLG  AEA++ R++ LPRE+F+ GDRVR  +
Sbjct: 122 KRQFNEYKDRNGEIVNGLVKRVEYGNVTVDLGR-AEAILRRDELLPREHFKNGDRVRAYI 180

Query: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243
           + V  E RG Q+F++R+ P  +A+LF  EVPEI + +IE+KA ARDPGSRAKIAV ++D 
Sbjct: 181 FDVREEPRGPQIFLSRTHPMFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIAVLSHDS 240

Query: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303
            IDPVGACVGMRG+RVQAV GEL GE+IDI+ W+     FV+NA+APA+VA +++D+D H
Sbjct: 241 SIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNGEAPTFVVNALAPAEVAKVVLDDDNH 300

Query: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363
            +++ V  D L+ AIGR GQNVRLAS LTGW+++++T  +  ++  EE       FM+ L
Sbjct: 301 RIEVVVPDDQLSLAIGRRGQNVRLASMLTGWDIDILTEQEESERRSEEIHNRSALFMQAL 360

Query: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423
           D++   A LLV EGF+++EEIAYV   EL +++G DE +ADEL+ R   AL  + +  E+
Sbjct: 361 DVDDVIAHLLVAEGFTSVEEIAYVETEELAEIEGFDESVADELKQR---ALAFLEVRDEQ 417

Query: 424 SFE-GLE-PAEDLLA-LAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGL------- 473
           + E  LE   ED++A L G       KL   GV TL+DLAD   D+L  I G        
Sbjct: 418 ANERRLELGVEDIIAELTGFSATQLVKLGENGVKTLDDLADLAGDELVEILGKDGAKDAP 477

Query: 474 TEQRAGELIMAARNICWF---GED 494
           +E+ A  +IMAAR   WF   GED
Sbjct: 478 SEEEANAIIMAAR-AHWFEGEGED 500