Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 498 a.a., hypothetical protein from Alteromonas macleodii MIT1002

 Score =  689 bits (1777), Expect = 0.0
 Identities = 344/497 (69%), Positives = 421/497 (84%), Gaps = 3/497 (0%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60
           M+KEIL V EAVSNEK VPRE+IFEALE A+A++TKKK E EI+VRV+IDR +G F+TFR
Sbjct: 1   MNKEILLVAEAVSNEKQVPREKIFEALEFAIASATKKKNEGEIEVRVSIDRTSGDFDTFR 60

Query: 61  RWLVV---ENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQK 117
           RWLV+   +  E+P  EI+  AA  D+  +QLGDY+E+QIES+ FDRITTQTAKQVIVQK
Sbjct: 61  RWLVIPDDQEQENPFAEITISAAQIDEPEIQLGDYVEEQIESIKFDRITTQTAKQVIVQK 120

Query: 118 VREAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGD 177
           VREAER Q++ ++ D  GELVTG VKKVNR+ +I+DLGNNAE VI R+D LPRE FRPGD
Sbjct: 121 VREAERQQMIAEYEDKVGELVTGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGD 180

Query: 178 RVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIA 237
           RVRGLLY + PEARG QLFI+R+ P+ML ELFR+EVPEI EE +E+K+AARDPGSRAKIA
Sbjct: 181 RVRGLLYVIRPEARGAQLFISRTHPDMLVELFRLEVPEIAEETLEIKSAARDPGSRAKIA 240

Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASII 297
           VKTNDKR+DPVGACVGMRG+RVQAVSGELGGER+DIVLWD+NPAQFVINAMAPA+VASI+
Sbjct: 241 VKTNDKRLDPVGACVGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMAPAEVASIV 300

Query: 298 MDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIE 357
           +DED++SMD+AVEADNLAQAIGR+GQNVRLASQLTGWELNVMTV DL KKH+EE+   ++
Sbjct: 301 VDEDSNSMDVAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLNKKHEEENAKVLD 360

Query: 358 NFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTI 417
            F   LDI+++FA +LV+EGF+TLEE+AYVP +ELL V+G+DE++ +ELR+RA+  LTT 
Sbjct: 361 LFTAGLDIDEEFASVLVDEGFTTLEEVAYVPASELLAVEGLDEEMVEELRNRARAFLTTR 420

Query: 418 ALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQR 477
           ALA EES EG EP E LL L G+ + +A+ LA++GV  LE+LA+QG DD+  I+ L E++
Sbjct: 421 ALANEESLEGAEPTEALLNLEGMSKHVAYVLASRGVTDLEELAEQGTDDISDIDELDEEK 480

Query: 478 AGELIMAARNICWFGED 494
           AG LIMAARNI WF E+
Sbjct: 481 AGALIMAARNIVWFSEE 497