Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 538 a.a., N-utilization substance protein A from Agrobacterium fabrum C58

 Score =  407 bits (1046), Expect = e-118
 Identities = 211/477 (44%), Positives = 311/477 (65%), Gaps = 4/477 (0%)

Query: 4   EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
           E+L + +AV+ EK + RE +  A+  A+  + + +Y  E ++R  I+ KTG     R   
Sbjct: 9   ELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSETNIRADINSKTGEIRLQRLLE 68

Query: 64  VVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123
           VVE  E  + +I  E A   +   +LGD+I D +  + F RI  Q+AKQVIVQKVREAER
Sbjct: 69  VVEAAEDYSTQIPLELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQKVREAER 128

Query: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183
            +  ++F D  GE+V G VK+V    VI+DLG   E +I R++ +PREN R GDRVR  +
Sbjct: 129 DRQYDEFKDRIGEIVNGTVKRVEYGNVIVDLGRG-EGIIRRDEMIPRENMRYGDRVRAYV 187

Query: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243
           Y V  E RG Q+F++R+ P+ + +LF +EVPEI + +I++K+ ARDPGSRAKIAV +ND 
Sbjct: 188 YDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAVISNDS 247

Query: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303
            IDPVGACVGMRG+RVQAV GEL GE+IDI+ W   PA F++NA+ PA+VA +++DE++ 
Sbjct: 248 SIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQEPASFIVNALQPAEVAKVVLDEESE 307

Query: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363
            +++ V  + L+ AIGR GQNVRLASQLTGW++++MT  +  ++ Q+E       FM+ L
Sbjct: 308 RIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEQEESERRQKEFNERTALFMEAL 367

Query: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423
           D+++   ++L  EGF+ +EE+AYV ++E+  +DG DED ADE+++RA+E L  +    + 
Sbjct: 368 DVDEMVGQVLASEGFAQVEELAYVDLDEITSIDGFDEDTADEIQTRAREYLERLEAEMDA 427

Query: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGE 480
             + L   ++L  + GL   M   L   G+ T+ED A    DDL    G +E++ GE
Sbjct: 428 KRKELGVTDELRQIDGLTSQMMVALGEDGIKTIEDFAGCAADDL---VGWSERKDGE 481



 Score = 32.3 bits (72), Expect = 4e-05
 Identities = 37/179 (20%), Positives = 82/179 (45%), Gaps = 17/179 (9%)

Query: 312 DNLAQAIGRNGQNVR-LASQLTGWELNVMTVADLQKKHQEESMASIENFMKYLDIEQDFA 370
           D +   +G  G  V+ +  +L G +++++  +       +E  + I N ++  ++    A
Sbjct: 250 DPVGACVGMRGSRVQAVVGELQGEKIDIIPWS-------QEPASFIVNALQPAEV----A 298

Query: 371 ELLVEEGFSTLEEIAYVPMNEL---LDVDGMDEDLADELRSRAKEALTTIALAKEESFEG 427
           +++++E    +E +  VP  +L   +   G +  LA +L     + +T    ++    E 
Sbjct: 299 KVVLDEESERIEVV--VPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEQEESERRQKEF 356

Query: 428 LEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGELIMAAR 486
            E     +    ++  +   LA++G A +E+LA   +D++  I+G  E  A E+   AR
Sbjct: 357 NERTALFMEALDVDEMVGQVLASEGFAQVEELAYVDLDEITSIDGFDEDTADEIQTRAR 415