Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 494 a.a., Transcription termination/antitermination protein NusA from Acinetobacter radioresistens SK82

 Score =  482 bits (1241), Expect = e-140
 Identities = 258/497 (51%), Positives = 343/497 (69%), Gaps = 10/497 (2%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKY-----EIEIDVRVAIDRKTGA 55
           M +EIL VVE VSNEK V RE IFEALE AL  +TKKK+       E  +RV IDRKTG 
Sbjct: 1   MGREILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTTAEEARLRVEIDRKTGD 60

Query: 56  FETFRRWLVVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIV 115
           + TFR+W VV + +H         +  D     +GD  E ++ES+ F RI  Q AKQVIV
Sbjct: 61  YRTFRQWEVVADEDHEMPACQDAISDVDPAKWSIGDIRELEVESIEFGRIAAQIAKQVIV 120

Query: 116 QKVREAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRP 175
           QK+REAERA I + +    GEL+ G VKK  ++  I+DLG+NAEA + RE+ + +E  RP
Sbjct: 121 QKIREAERALIADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIAKEILRP 180

Query: 176 GDRVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAK 235
             R+  +LY V  E RG QL ++R+KPEML  L + E+PEI EE+IE+KAAAR PG RAK
Sbjct: 181 KQRINAILYSVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240

Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVAS 295
           IAVKTND RIDPVGAC+GMRG R+QAV  EL GERID+V+W D+PAQ++ +A+ PADV+ 
Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300

Query: 296 IIMDEDAHSMDIA-VEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMA 354
           I++DED HS DI    +D LA+AIG  GQNVRLAS+LTG++L++M   + + + Q E+  
Sbjct: 301 IVLDEDTHSADIIFATSDQLARAIGSQGQNVRLASELTGYKLDMMLEDEYRARQQNEAQQ 360

Query: 355 SIENFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEAL 414
            ++ F+  LDIE+D A  LVE GF++LEE+AYVP  E  D   +D +L + L+SRAKEA 
Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEVAYVPA-ETFDEIELDTELVELLQSRAKEAA 419

Query: 415 TTIALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLT 474
              AL ++E+ +  +P+E+LL + G+ R++A+ LAA+GV T++DLADQ  DD+  IEGL 
Sbjct: 420 LADALKQQENIQ--DPSEELLNMEGMTREIAYSLAARGVVTVDDLADQATDDIADIEGLD 477

Query: 475 EQRAGELIMAARNICWF 491
              AG+LIM AR   WF
Sbjct: 478 AASAGQLIMKARE-SWF 493