Pairwise Alignments

Query, 209 a.a., ribosomal RNA large subunit methyltransferase E from Vibrio cholerae E7946 ATCC 55056

Subject, 253 a.a., 23S rRNA (uridine(2552)-2'-O)-methyltransferase (EC 2.1.1.166) from Variovorax sp. SCN45

 Score =  187 bits (476), Expect = 1e-52
 Identities = 98/215 (45%), Positives = 134/215 (62%), Gaps = 8/215 (3%)

Query: 2   SKQKHSASSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGAA 61
           +K K    +  WL +H +D YV  A K+GYR+RA +K++EI     L+K G  VVDLG+ 
Sbjct: 34  TKAKSKKVNKAWLHDHINDPYVKLATKEGYRARAAYKLKEIDESLGLVKPGQLVVDLGST 93

Query: 62  PGGWSQFAAK-------VVGE-GGRVIACDLLPMESIAGVSFLQGDFREEAVLNALLDRI 113
           PG WSQ+  +         GE  G +IA D+LPME I GV+FLQGDFRE+A+L  LL  +
Sbjct: 94  PGAWSQYLRRRMSPDGAAAGELNGTIIALDILPMEPIEGVTFLQGDFREDALLQQLLGVL 153

Query: 114 QPDMVDVVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDD 173
                D+V+SDMAPN++G  S D  R  +L+ELA+D  +  L P G+ V K+F G G+DD
Sbjct: 154 AGRKADLVVSDMAPNLSGIHSADAARVAHLIELAIDFAQHHLKPEGALVAKLFHGSGYDD 213

Query: 174 YVKAVRDLFKVVKIRKPDSSRSRSREVFIVATGYK 208
            VK  +  F++VK  KP +SR +S E F+V  G K
Sbjct: 214 LVKLFKANFRIVKPFKPKASRDKSSETFLVGVGLK 248