Pairwise Alignments

Query, 157 a.a., transcription elongation factor GreA from Vibrio cholerae E7946 ATCC 55056

Subject, 158 a.a., transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) from Escherichia coli BW25113

 Score =  211 bits (536), Expect = 6e-60
 Identities = 111/158 (70%), Positives = 129/158 (81%), Gaps = 1/158 (0%)

Query: 1   MEKVPMTARGEKLLREELDRLLKLR-PKITEAIAEARELGDLKENAEYHAAREEQGICEA 59
           M+ +PMT RG + LREELD L  +R P+I  AIAEARE GDLKENAEYHAARE+QG CE 
Sbjct: 1   MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 60  QIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGRI 119
           +I+DIE KLS AQVIDVTKM N+G+VIFGATVTV++++SDEE+TY+IVGDDEAD K   I
Sbjct: 61  RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLI 120

Query: 120 SVNSPIARGLIGKFEGDEVSIATPGGNKVFEIDRVEYL 157
           SVNSPIARGLIGK E D V I TPGG   FE+ +VEYL
Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158