Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 350 a.a., Outer membrane pore protein E precursor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  100 bits (249), Expect = 6e-26
 Identities = 99/376 (26%), Positives = 155/376 (41%), Gaps = 61/376 (16%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEAR--LSLKDG 67
           MNK+ +A+ VS  A A+   A+            VY+  G  L+V G+ +A   +S  D 
Sbjct: 1   MNKSTLAIVVSIIASASVHAAE------------VYNKNGNKLDVYGKVKAMHYMSDYDS 48

Query: 68  KAQDNSRVRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIG-GTY 126
           K  D S VR  F G+ +IND L G G +E EF +N    ++S      R  +AG+     
Sbjct: 49  KDGDQSYVRFGFKGETQINDQLTGYGRWEAEFASNKAESDSSQQK--TRLAFAGLKLKDI 106

Query: 127 GEVTYGKNDGALGVITDFTDIMSYHGNTAAEKIA--VADRVDNMLAYKGQ--FGDL-GVK 181
           G   YG+N GAL  +  +TD+    G  ++ +    +  R   +  Y+    FG + G+ 
Sbjct: 107 GSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGIVDGLD 166

Query: 182 ASYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQDDQN 241
            + ++  +N          E    K   NG DG+  S  Y FG + F V   Y   D   
Sbjct: 167 LTLQYQGKN----------EDRDVK-KQNG-DGFGTSVSYDFGGSDFAVSGAYTLSDRTR 214

Query: 242 EYML--------------AASYRMENLYFAGLFTD---------GELAKDVDYTG---YE 275
           E  L                 Y   ++Y A  +++         G   K  ++     Y+
Sbjct: 215 EQNLQRRGTGDKAEAWATGVKYDANDIYIATFYSETRNMTPVSGGFANKTQNFEAVIQYQ 274

Query: 276 LAAGYKLGQAAFTATYNNAETAKETSADNFA-IDATYYFKPNFRSYISYQFNLLDSDKVG 334
              G +       +   + E        N+  + ATYYF  N  +++ Y+ N LDSD   
Sbjct: 275 FDFGLRPSLGYVLSKGKDIEGVGSEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNTL 334

Query: 335 KVASEDELAIGLRYDF 350
            +  +D +AIGL Y F
Sbjct: 335 GINDDDIVAIGLTYQF 350