Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 363 a.a., Outer membrane protein F precursor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 87.8 bits (216), Expect = 4e-22
 Identities = 95/387 (24%), Positives = 157/387 (40%), Gaps = 71/387 (18%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEAR---LSLKD 66
           M + ++A  + A   A  A A           + +Y+  G  L++ G+A  R    +  D
Sbjct: 2   MKRKILAAVIPALLAAATANA-----------AEIYNKDGNKLDLYGKAVGRHVWTTTGD 50

Query: 67  GKAQDNSRVRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIG-GT 125
            K  D +  ++ F G+ +IN  L G G +E   T  D+ +    NS   R  +AG+    
Sbjct: 51  SKNADQTYAQIGFKGETQINTDLTGFGQWEYR-TKADRAEGEQQNSNLVRLAFAGLKYAE 109

Query: 126 YGEVTYGKNDGALGVITDFTDIMSYH-GNT---AAEKIAVADRVDNMLAYKGQ--FGDL- 178
            G + YG+N G +  +  +TD+  Y  G T   A     +  R   +L Y+    FG + 
Sbjct: 110 VGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVD 169

Query: 179 GVKASYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYA--- 235
           G+    ++  +N          + N +  S NG DG   +  Y F   GF V A Y+   
Sbjct: 170 GLSFGIQYQGKN----------QDNHSINSQNG-DGVGYTMAYEFD--GFGVTAAYSNSK 216

Query: 236 ---DQDDQN-------EYMLAASYRMENLYFAGLFTDGELAKDVDYT------------G 273
              DQ D++        + + A Y   N+Y A ++ +      V+ T             
Sbjct: 217 RTNDQQDRDGNGDRAESWAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQN 276

Query: 274 YELAAGYKLGQAAFTATYNNAETAKETSADNFAID--------ATYYFKPNFRSYISYQF 325
            E+ A Y+       A        K+ +    + D        ATYYF  N   ++ Y+F
Sbjct: 277 LEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRF 336

Query: 326 NLLDSDKVGK--VASEDELAIGLRYDF 350
           NLLD +      V ++D+ A+G+ Y F
Sbjct: 337 NLLDENDYSSSYVGTDDQAAVGITYQF 363