Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., Outer membrane porin protein NmpC precursor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  101 bits (252), Expect = 3e-26
 Identities = 102/388 (26%), Positives = 161/388 (41%), Gaps = 73/388 (18%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKDGKA 69
           M   L+A+AV++   A           G    + VY+  G  L++ G+  A+    D   
Sbjct: 1   MKLKLVAVAVTSLLAA-----------GVVNAAEVYNKDGNKLDLYGKVHAQHYFSDDNG 49

Query: 70  QDNSRV--RLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIG-GTY 126
            D  +   RL F G+ +IND L G G +E EF  N      ++     R  +AG+    Y
Sbjct: 50  SDGDKTYARLGFKGETQINDQLTGFGQWEYEFKGNRTESQGADKD-KTRLAFAGLKFADY 108

Query: 127 GEVTYGKNDGALGVITDFTDIM-SYHGNTAAEK-IAVADRVDNMLAYKGQ--FGDL-GVK 181
           G   YG+N G    I  +TD++  + G+T  +  + +  R   +  Y+    FG + G+ 
Sbjct: 109 GSFDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDVFMTGRTTGVATYRNTDFFGLVEGLN 168

Query: 182 ASYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQDDQN 241
            + ++  +N  D             Y  NG DG+ LSA Y +   GF VGA YA  D  N
Sbjct: 169 FAAQYQGKNDRDGA-----------YESNG-DGFGLSATYEY--EGFGVGAAYAKSDRTN 214

Query: 242 EYMLAAS-----------------YRMENLYFAGLFTD-------GELAKDVDYTG---- 273
             + AAS                 Y   N+Y A  +++       GE A    +      
Sbjct: 215 NQVKAASNLNAAGKNAEVWAAGLKYDANNIYLATTYSETLNMTTFGEDAAGDAFIANKTQ 274

Query: 274 -------YELAAGYKLGQAAFTATYNNAET-AKETSADNFAIDATYYFKPNFRSYISYQF 325
                  Y+   G +   A   +   N  T   +   +   + ATYYF  N  +++ Y+ 
Sbjct: 275 NFEAVAQYQFDFGLRPSIAYLKSKGKNLGTYGDQDLVEYIDVGATYYFNKNMSTFVDYKI 334

Query: 326 NLLDSD---KVGKVASEDELAIGLRYDF 350
           NLLD     K  KV++++ +A+GL Y F
Sbjct: 335 NLLDDSDFTKAAKVSTDNIVAVGLNYQF 362