Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., Outer membrane protein N precursor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  102 bits (253), Expect = 2e-26
 Identities = 95/394 (24%), Positives = 157/394 (39%), Gaps = 70/394 (17%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKDGKA 69
           M + ++AL + A   A  A+A           + +Y+  G  L++ G+ +      D  +
Sbjct: 1   MKRKVLALVIPALLAAGAAHA-----------AEIYNKDGNKLDLYGKVDGLHYFSDDSS 49

Query: 70  QDNSR--VRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIG-GTY 126
           +D  +  +R+ F G+ +IND L G G +E     N      +N+    R  +AG+  G Y
Sbjct: 50  KDGDQTYMRVGFKGETQINDQLTGYGQWEYNVQANTTEGEGANSW--TRLAFAGLKFGDY 107

Query: 127 GEVTYGKNDGALGVITDFTDIMSYHGN---TAAEKIAVADRVDNMLAYK-----GQFGDL 178
           G   YG+N G L  +  +TD++   G    T A+   +  R + +  Y+     G    L
Sbjct: 108 GSFDYGRNYGVLYDVEGWTDMLPEFGGDSYTYADNF-MTGRANGVATYRNTDFFGLVDGL 166

Query: 179 GVKASYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQD 238
                Y+ A+ N V                +   DG+ +S+ Y  G  G + GA Y   D
Sbjct: 167 NFALQYQGANENQVSHEQEGTNNGGDRNVKNANGDGFGISSTYDLG-MGVSFGAAYTTSD 225

Query: 239 DQN--------------EYMLAASYRMENLYFAGLFTDGELAKDVDY------------- 271
             N               + + A Y   N+Y A +++  E      Y             
Sbjct: 226 RTNGQVNYSTAGGDKADAWTVGAKYDANNIYLATMYS--ETRNMTPYGNDDCRSCVANKT 283

Query: 272 TGYELAAGYKLGQAAFTA-----------TYNNAETAKETSADNFAIDATYYFKPNFRSY 320
             +E+ A Y+       A           TYNN     +       + ATYYF  NF +Y
Sbjct: 284 QNFEVTAQYQFDFGLRPAVSFLMSKGKDLTYNNVNGDDKDLVKYADVGATYYFNKNFSTY 343

Query: 321 ISYQFNLLDSD----KVGKVASEDELAIGLRYDF 350
           + Y+ NLLD D    K   ++++D +A+G+ Y F
Sbjct: 344 VDYKINLLDDDDQFYKDAGISTDDIVALGMVYQF 377