Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., outer membrane porin 1a (Ia;b;F) (NCBI) from Escherichia coli BW25113

 Score = 82.4 bits (202), Expect = 2e-20
 Identities = 91/383 (23%), Positives = 147/383 (38%), Gaps = 64/383 (16%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKDGKA 69
           M + ++A+ V A  VA  A A           + +Y+  G  +++ G+A        G  
Sbjct: 2   MKRNILAVIVPALLVAGTANA-----------AEIYNKDGNKVDLYGKAVGLHYFSKGNG 50

Query: 70  Q-------DNSRVRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGI 122
           +       D +  RL F G+ +IN  L G G +E  F  N+     +      R  +AG+
Sbjct: 51  ENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGL 110

Query: 123 G-GTYGEVTYGKNDGALGVITDFTDIM-SYHGNTAAEKIAVADRVDNMLAYKGQFGDLGV 180
                G   YG+N G +     +TD++  + G+TA        RV  +  Y+      G+
Sbjct: 111 KYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNS-NFFGL 169

Query: 181 KASYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQDDQ 240
                FA    V  +G    E + A+ S+    G S+S  Y     GF +   Y   D  
Sbjct: 170 VDGLNFA----VQYLGK--NERDTARRSNGDGVGGSISYEYE----GFGIVGAYGAADRT 219

Query: 241 N--------------EYMLAASYRMENLYFAGLFTDGELA-----KDVDYTGYE------ 275
           N              ++     Y   N+Y A  + +   A     K  + +G+       
Sbjct: 220 NLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDV 279

Query: 276 -LAAGYKLGQAAFTATYNNAETAKETSA-------DNFAIDATYYFKPNFRSYISYQFNL 327
            L A Y+       +       AK+          + F + ATYYF  N  +Y+ Y  N 
Sbjct: 280 LLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQ 339

Query: 328 LDSDKVGKVASEDELAIGLRYDF 350
           +DSD    V S+D +A+G+ Y F
Sbjct: 340 IDSDNKLGVGSDDTVAVGIVYQF 362