Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 351 a.a., outer membrane phosphoporin protein E (NCBI) from Escherichia coli BW25113

 Score =  101 bits (252), Expect = 3e-26
 Identities = 93/378 (24%), Positives = 153/378 (40%), Gaps = 64/378 (16%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKDGKA 69
           M K+ +AL V            GI  S     + +Y+  G  L+V G+ +A   + D  +
Sbjct: 1   MKKSTLALVVM-----------GIVASASVQAAEIYNKDGNKLDVYGKVKAMHYMSDNAS 49

Query: 70  QDN--SRVRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIG-GTY 126
           +D   S +R  F G+ +IND L G G +E EF  N    + +      R  +AG+     
Sbjct: 50  KDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESDTAQQK--TRLAFAGLKYKDL 107

Query: 127 GEVTYGKNDGALGVITDFTDIMSYHGNTAAEKIA--VADRVDNMLAYKGQ--FGDL-GVK 181
           G   YG+N GAL  +  +TD+    G  ++ +    +  R   +  Y+    FG + G+ 
Sbjct: 108 GSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGVIDGLN 167

Query: 182 ASYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQDDQN 241
            + ++  +N            N      NG DG+  S  Y FG + F +   Y + D  N
Sbjct: 168 LTLQYQGKNE-----------NRDVKKQNG-DGFGTSLTYDFGGSDFAISGAYTNSDRTN 215

Query: 242 EYMLAA--------------SYRMENLYFAGLFTDGELAKDVDYTG-------------- 273
           E  L +               Y   N+Y A  ++  E  K    TG              
Sbjct: 216 EQNLQSRGTGKRAEAWATGLKYDANNIYLATFYS--ETRKMTPITGGFANKTQNFEAVAQ 273

Query: 274 YELAAGYKLGQAAFTATYNNAETAKETSADNFA-IDATYYFKPNFRSYISYQFNLLDSDK 332
           Y+   G +       +   + E   +    N+  + ATYYF  N  +++ Y+ N LDSD 
Sbjct: 274 YQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDN 333

Query: 333 VGKVASEDELAIGLRYDF 350
              + ++D +A+G+ Y F
Sbjct: 334 KLNINNDDIVAVGMTYQF 351