Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., porin OmpC from Erwinia tracheiphila SCR3

 Score = 92.0 bits (227), Expect = 2e-23
 Identities = 96/386 (24%), Positives = 156/386 (40%), Gaps = 63/386 (16%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEAR--LSLKDG 67
           M + ++AL + A  +ATGA             + VY+  G  L++ G+A      S  DG
Sbjct: 1   MKRNILALVIPAL-LATGA----------ANAAEVYNKNGNKLDLYGKAIGLHYFSDNDG 49

Query: 68  KAQDNSRVRLNFLGKAEINDSLYGVGFYEGEFTTND-QGKNASNNSLDNRYTYAGIG-GT 125
              D S VR  F G+ +IND L G G +E  F TN+ +G   + +    R  +AG+    
Sbjct: 50  NNGDQSYVRFGFKGETQINDQLTGYGQWEYNFQTNNSEGAADAQSQNKTRLGFAGLKFKD 109

Query: 126 YGEVTYGKNDGALGVITDFTDIMSYHGNTAAEKIAVADRVDNMLAYKGQFGDLGVKASYR 185
           +G   YG+N         +TD++   G    +   +  R   +  Y+      G+   + 
Sbjct: 110 FGSFDYGRNYAIGYDALAWTDMLPEFGGDFGQSDTLTSRTTGVATYRNT-NFFGLVDGWN 168

Query: 186 FADRNAVDAMGNVVTETNAAKYS---DNGEDGYSLSAIYTFGDTGFNVGAGYADQD---D 239
           FA    +   G   ++TN +       NG DGY +S  Y     G  +   Y+  D   D
Sbjct: 169 FA----LQYQGKNSSDTNNSGRDILRQNG-DGYGVSTSYV-SPIGVGIVTAYSAHDRTTD 222

Query: 240 QNEYMLAA------------SYRMENLYFAGLFTDGELA--------------------- 266
           QN  +                Y   N+Y A  + +G  A                     
Sbjct: 223 QNTLVALGRGDRAEFWGTGLKYDANNVYLAATYAEGRNATRIPQTTDINGNTVSGFANKT 282

Query: 267 KDVDYTG-YELAAGYKLGQAAFTATYNNAETAKETSADNFA-IDATYYFKPNFRSYISYQ 324
           +D+++   Y+   G +   A       + E   +     +A + ATYYF  N  +Y+ YQ
Sbjct: 283 QDIEFVAQYQFDFGLRPSIAYVQTKGKDIENYGDVDLVKYAEVGATYYFNKNMYTYVDYQ 342

Query: 325 FNLLDSDKVGKVASEDELAIGLRYDF 350
            NLL+S+    + ++D +A+GL Y F
Sbjct: 343 INLLNSNNALGLNTDDTVALGLVYQF 368