Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 350 a.a., Outer membrane protein (porin) from Enterobacter asburiae PDN3

 Score =  101 bits (251), Expect = 3e-26
 Identities = 97/377 (25%), Positives = 156/377 (41%), Gaps = 63/377 (16%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKDGKA 69
           M K+ +AL V     +   +A           + VY+  G  L+V G+ +A   + D   
Sbjct: 1   MKKSTLALMVMGVVASASVHA-----------AEVYNKNGNKLDVYGKVKAMHYISDDAT 49

Query: 70  QDNSR--VRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIG-GTY 126
           +D  +  VR  F G+ +IND L G G +E EF  N   K  S++S   R  +AG+    +
Sbjct: 50  KDGDQTYVRFGFKGETQINDQLTGYGRWESEFAGN---KAESDSSQKTRLAFAGLKLKNF 106

Query: 127 GEVTYGKNDGALGVITDFTDIMSYHGNTAAEKIAVADRVDNMLAYKGQFGDLGVKASYRF 186
           G + YG+N GAL  +  +TD+    G  ++       + DN +  +      G+ A+YR 
Sbjct: 107 GSLDYGRNLGALYDVEAWTDMFPEFGGDSSA------QTDNFMTKRA----TGL-ATYRN 155

Query: 187 AD-RNAVDAMGNVV-----TETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQDDQ 240
            D   AVD +   +      E   AK   NG DG+  S  Y FG + F V   Y + D  
Sbjct: 156 TDFFGAVDGLDMTLQYQGKNENRDAK-KQNG-DGFGTSLTYDFGGSDFAVSGAYTNSDRT 213

Query: 241 NEYMLAA--------------SYRMENLYFAGLFTDGELAKDVD------YTGYELAAGY 280
           N   L A               Y   ++Y A ++++      +          +E+ A Y
Sbjct: 214 NAQNLLARGQGQKAEAWATGLKYDANDIYLAAMYSETRNMTPISGGFANKAQNFEVVAQY 273

Query: 281 KLGQAAFTATYNNAETAK-------ETSADNFAIDATYYFKPNFRSYISYQFNLLDSDKV 333
           +       +        K       E       + ATYYF  N  +++ Y+ N +D    
Sbjct: 274 QFDFGLRPSLGYVQSKGKDIEGIGDEDLVKYIDVGATYYFNKNMSTFVDYKINQIDDKNK 333

Query: 334 GKVASEDELAIGLRYDF 350
             V+S+D +A+G+ Y F
Sbjct: 334 LGVSSDDIVALGMTYQF 350