Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., Outer membrane protein (porin) from Enterobacter asburiae PDN3

 Score = 83.2 bits (204), Expect = 1e-20
 Identities = 92/387 (23%), Positives = 147/387 (37%), Gaps = 66/387 (17%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEAR----LSLK 65
           M + ++A+ + A  VA  A A           + +Y+  G  L+  G+  A      S  
Sbjct: 2   MKRNILAVVIPALLVAGAANA-----------AEIYNKNGNKLDFYGKVNAEHDFVTSGD 50

Query: 66  DGKAQDNSRVRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGI-GG 124
           +    D +  ++ F G+ +IND L G G +E  F  N     A  N   NR  +AG+  G
Sbjct: 51  NTNNNDATYAQIGFKGETQINDQLTGYGQWEYRFLANQAENGAQTNK--NRLAFAGLKAG 108

Query: 125 TYGEVTYGKNDGALGVITDFTDIM-SYHGNTAAEKIAVADRVDNMLAYKGQFGDLGVKAS 183
             G + YG+N G +  +  +TD+  S+ G T        + VDN +  +   G L  + S
Sbjct: 109 DAGSIDYGRNYGIVYDVESYTDMAPSFSGMTWG-----GNYVDNFMTSRST-GLLTYRNS 162

Query: 184 YRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQ------ 237
             F   + +        + + A    +  DG   S  Y FG+ GF   A Y++       
Sbjct: 163 NFFGLVDGLSLGVQYQGKNDRADVKTSNGDGVGYSLGYDFGE-GFGAIASYSNANRTLNQ 221

Query: 238 ------DDQNEYMLAASYRMENLYFAGLFTDGELAKDVDYTG----------YELAAGYK 281
                 D    + +   Y   N+Y A  + +          G          +E+ A Y+
Sbjct: 222 KADGEGDKAEAWGVGLKYDANNIYLATTYAETRNTTRTGSNGDAGFANKTQNFEVVAQYQ 281

Query: 282 LGQAAFTATYNNAETAKETSADN------------FAIDATYYFKPNFRSYISYQFNLLD 329
                  A        K+ +A N              +  TYYF  NF  +  Y  NLLD
Sbjct: 282 FDFGLRPAISYVQTKGKDLAAVNGFSGGDADLAKFIQVGTTYYFNKNFNVWADYYINLLD 341

Query: 330 SDK-----VGKVASEDEL-AIGLRYDF 350
            D      VG +   D++ A+G+ Y F
Sbjct: 342 KDSDYAKAVGGLNGNDDMAAVGVTYQF 368