Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., Outer membrane protein (porin) from Enterobacter asburiae PDN3

 Score = 87.8 bits (216), Expect = 4e-22
 Identities = 96/390 (24%), Positives = 155/390 (39%), Gaps = 79/390 (20%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKDGKA 69
           M   L+A+AV++   A           G    + +Y+  G  L++ G+        D   
Sbjct: 1   MKLKLVAVAVTSMLAA-----------GVVNAAEIYNKDGNKLDLYGKVTGLHYFSDDTD 49

Query: 70  QDNSR--VRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIG-GTY 126
            D  +  VRL F G+ +IND L G G +E EF  N      S+ S   R  +AG+    +
Sbjct: 50  NDGDKTYVRLGFKGETQINDQLSGYGQWEYEFKGNRSESQGSDGS-KTRLAFAGLKFNEF 108

Query: 127 GEVTYGKNDGALGVITDFTDIM-SYHGNTAAEKIA-VADRVDNMLAYK-----GQFGDLG 179
           G   YG+N G    I  +TD++  + G+T  +    +  R   +  Y+     G    L 
Sbjct: 109 GSFDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDGFMTGRTTGVATYRNTDFFGLVDGLN 168

Query: 180 VKASYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQDD 239
           V A Y+  +        N +TE N         DG+ LS+ Y     GF VGA YA  D 
Sbjct: 169 VAAQYQGKNDR------NDITEANG--------DGWGLSSTYEMD--GFGVGATYAKSDR 212

Query: 240 QNEYMLAA--------------------SYRMENLYFAGLFTD---------GELAKDVD 270
            +  + A                      Y   N+Y A  +++         G +A    
Sbjct: 213 TDRQVAAGRVANTVNAGGENAEVWAAGLKYDANNIYLATTYSETRNMTNFGSGYIANKAQ 272

Query: 271 YTGYELAAGYKLGQAAFTATYNNAETAKETSA-------DNFAIDATYYFKPNFRSYISY 323
              +E+ A Y+       +        K+  +       +   + A+YYF  N  +Y+ Y
Sbjct: 273 --NFEVVAQYQFDFGLRPSIAYLKSKGKDLGSYGDQDLVEYVDVGASYYFNKNMSTYVDY 330

Query: 324 QFNLLDSDKVGK---VASEDELAIGLRYDF 350
           + NL+D +   K   VA+++ +A+GL Y F
Sbjct: 331 KINLVDDNSFTKATGVATDNIVAVGLTYQF 360