Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., Outer membrane protein (porin) from Enterobacter asburiae PDN3

 Score =  102 bits (253), Expect = 2e-26
 Identities = 91/384 (23%), Positives = 159/384 (41%), Gaps = 58/384 (15%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKDGKA 69
           M + ++AL + A  +A  A+A           + +Y+  G  L++ G+ +      D K 
Sbjct: 1   MQRKVLALMIPALLMAGSAHA-----------AEIYNKDGNKLDLYGKVDGLHYFSDNKG 49

Query: 70  QDNSR--VRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIG-GTY 126
            D  +  +RL F G+ +IN+++   G+ + E+         S+N    R  +AG+  G Y
Sbjct: 50  ADGDQTYMRLGFKGETQINNTM--TGYAQWEYNIQANNTEGSDNQSWTRLAFAGVKVGDY 107

Query: 127 GEVTYGKNDGALGVITDFTDIMSYHGNTAAEKIA--VADRVDNMLAYKG-QFGDL--GVK 181
           G   YG+N G L  +  +TD++   G  +  K    +  R + +  Y+   F  L  G+ 
Sbjct: 108 GSFDYGRNYGVLYDVEGWTDMLPEFGGDSYTKADNFMTGRANGVATYRNTDFYGLVQGLN 167

Query: 182 ASYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQDDQN 241
            + ++  +N  DA  N     N         DG+ +S  Y FG  G   GA Y   D  N
Sbjct: 168 FALQYQGKNE-DASNNQEGTNNGRDTRHENGDGFGISTTYDFG-MGITAGAAYTSSDRTN 225

Query: 242 EYMLAAS--------------YRMENLYFAGLFT---------DGELAKDVDYTGYELAA 278
           E ++  +              Y   N+Y A +++         D   A       +E+ A
Sbjct: 226 EQVMNTTAGGDKADAWTAGLKYDANNIYLAAMYSETRNMTPYGDNTDAVANKTQNFEVTA 285

Query: 279 GYKLG---QAAFTATYNNAETAKETSADNFAID-----ATYYFKPNFRSYISYQFNLLDS 330
            Y+     + + +   +  +       D   +       TYYF  N  +Y+ Y+ NLLD 
Sbjct: 286 QYQFDFGLRPSLSYLQSKGKDLGNGQGDQDLVKYADVGVTYYFNKNMSTYVDYKINLLDE 345

Query: 331 D----KVGKVASEDELAIGLRYDF 350
           D    K   ++++D +A+GL Y F
Sbjct: 346 DDNFYKDNGISTDDVVALGLVYQF 369